Protein Alignment CG12288 and Pabp2

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_476902.1
• Gene: Pabp2 / 35788
• FlyBaseID: FBgn0005648
• Length: 224
• Species: Drosophila melanogaster
• Alignment Length: 248
• Identity: 56/248 - (22%)
• Similarity: 92/248 - (37%)
• Gaps: 58/248 - (23%)

  Fly   136 ANNKDEEGVKRIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQR 200
            |...:|||..:| :|..||....|..:....:::                      ||:.....:
  Fly    29 ATEVEEEGSMQI-DPELEAIKARVKEMEEEAEKI----------------------KQMQSEVDK 70

  Fly   201 KVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFVG 265
            ::||                     ||   ...|...|.|:.|       ||..|   .|:::||
  Fly    71 QMAG---------------------GS---TTGLATVPLSLEE-------KQEID---TRSVYVG 101

  Fly   266 SLKYSATEEQLREIFSSCGEIDYIRCL-QDGDKGCKGVAYVCFQKPDAVGLALELNQTLLDDRPI 329
            ::.|.|:.|:|...|..||.|:.:..| ...|...||.||:.|...:.|..||.:|:||...|.|
  Fly   102 NVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQI 166

  Fly   330 NVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKEN 382
            .|...:..:.|.......|..|...:.:..::|...::....:|....:|:.|
  Fly   167 KVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRAN 219

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	8/81 (10%)
		RRM_SF	261..332	CDD:302621	25/71 (35%)
Pabp2	NP_476902.1	RRM	<43..>172	CDD:223796	43/184 (23%)
		RRM_II_PABPN1	97..172	CDD:240994	26/74 (35%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.910