DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and rbm7

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_956219.1 Gene:rbm7 / 334784 ZFINID:ZDB-GENE-030131-6724 Length:252 Species:Danio rerio


Alignment Length:138 Identity:36/138 - (26%)
Similarity:62/138 - (44%) Gaps:21/138 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 DAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LN 320
            :|.||:|||:|....|||.:.|:|...|.:..::..::.:...|..|:|.|:...:|..||. ||
Zfish     6 EADRTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNEGKSKLFAFVNFKHEVSVPYALNLLN 70

  Fly   321 QTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKENGSL 385
            ...|..|.:|::    .|.|:..:..          ..|:.|.:||.:.|     ...|...|..
Zfish    71 GIRLHGRQLNIK----FKTGSSHINQ----------EGKSPANSQNPSPA-----NTPGHRGGRT 116

  Fly   386 KKE-GAPT 392
            .:: |:|:
Zfish   117 PEQMGSPS 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840
RRM_SF 261..332 CDD:302621 23/71 (32%)
rbm7NP_956219.1 RRM <8..150 CDD:223796 35/136 (26%)
RRM_SF 8..82 CDD:302621 24/73 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..137 9/52 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..252
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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