DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and CG11454

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_608497.1 Gene:CG11454 / 33175 FlyBaseID:FBgn0031224 Length:238 Species:Drosophila melanogaster


Alignment Length:195 Identity:46/195 - (23%)
Similarity:90/195 - (46%) Gaps:26/195 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 GQAKDKQPSDKD-AKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQK 309
            ||.:|....::| .:||:|.|:|....|||.|.|:|...|.|:.:|...|.:...:...:|.:|:
  Fly    55 GQLEDDDDEEEDEEQRTLFCGNLDERVTEEILYEVFLQAGPIEGVRIPTDNNGRPRNFGFVTYQR 119

  Fly   310 PDAVGLALELNQTL-LDDRPINVERYQVKKLGA---KQVRDAAAASAASKTSSKTKAKNQNSAGA 370
            ..||..||:|.|.| |..:.:.:::...|:|.|   .::|:.....|..:.|....|::....| 
  Fly   120 LCAVPFALDLYQGLELFQKKVTIKQQGGKQLPAYNQSRLRNQFMMEALPQPSPLRHARHSLHNG- 183

  Fly   371 KKRLDKKKGKENGSLKKEGAPTGQKKKSEYRGVKVDGIKK----------AKKPKKKSNDQQTAL 425
             |..|:.....|..         |:::|:...::.:.:|.          :::..::||:::..|
  Fly   184 -KPYDRNPFGHNAD---------QRRRSDSSVMERNRLKPQQHHQHMQGGSRRSDQRSNNKRRLL 238

  Fly   426  425
              Fly   239  238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828
RRM_SF 261..332 CDD:473069 24/71 (34%)
CG11454NP_608497.1 RRM_RBM7_like 69..143 CDD:409773 25/73 (34%)
Blue background indicates that the domain is not in the aligned region.

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