Sequence 1: | NP_609822.1 | Gene: | CG12288 / 35027 | FlyBaseID: | FBgn0032620 | Length: | 435 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_956133.1 | Gene: | pabpc1l / 327625 | ZFINID: | ZDB-GENE-030131-5836 | Length: | 620 | Species: | Danio rerio |
Alignment Length: | 344 | Identity: | 74/344 - (21%) |
---|---|---|---|
Similarity: | 131/344 - (38%) | Gaps: | 95/344 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 150 PAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLN 207
Fly 208 AYVVLEKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYS 270
Fly 271 ATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERY 334
Fly 335 QVKK-----LGAKQVR-------------DA-----------AAASAASKTSSKTKAKN------ 364
Fly 365 QNSAGAKKRLDKKKGKE-----------------NGSLKKEGAPTGQKKKSEYRGVKVDGIKKAK 412
Fly 413 KPKKKSNDQQTALAKKIAP 431 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG12288 | NP_609822.1 | RRM1_RBM34 | 155..237 | CDD:240840 | 21/89 (24%) |
RRM_SF | 261..332 | CDD:302621 | 22/71 (31%) | ||
pabpc1l | NP_956133.1 | PABP-1234 | 11..610 | CDD:130689 | 72/339 (21%) |
RRM1_I_PABPs | 12..91 | CDD:240824 | 21/104 (20%) | ||
RRM2_I_PABPs | 97..172 | CDD:240825 | 23/75 (31%) | ||
RRM3_I_PABPs | 190..269 | CDD:240826 | 8/78 (10%) | ||
RRM4_I_PABPs | 293..370 | CDD:240827 | 8/30 (27%) | ||
PABP | 542..609 | CDD:279051 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |