DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and pabpc1l

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_956133.1 Gene:pabpc1l / 327625 ZFINID:ZDB-GENE-030131-5836 Length:620 Species:Danio rerio


Alignment Length:344 Identity:74/344 - (21%)
Similarity:131/344 - (38%) Gaps:95/344 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   150 PAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLN 207
            ||...::::||:|..:.....|.:.|.|.|.:.|||:       |:.|                .
Zfish     6 PAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLG----------------Y 54

  Fly   208 AYVVLEKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYS 270
            ||:..::|..|:.|| .:|....|...:|:          ....:.|. .|.....||:.::..|
Zfish    55 AYINFQQPADAECALDTMNYEVIKGRPIRI----------MWSQRDPGLRKSGVGNIFIKNMDES 109

  Fly   271 ATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERY 334
            ...:.|.:.||:.|.|...:.:.| :.|.||..:|.|:..:|...|:| :|..||:||.:.|..:
Zfish   110 IDNKALYDTFSAFGNILSCKVVCD-ENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHF 173

  Fly   335 QVKK-----LGAKQVR-------------DA-----------AAASAASKTSSKTKAKN------ 364
            :.:|     :|||.|.             |:           ...|....|..:.:::.      
Zfish   174 KSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNF 238

  Fly   365 QNSAGAKKRLDKKKGKE-----------------NGSLKKEGAPTGQKKKSEYRGVKVDGIKKAK 412
            .|...|::.:.:..|||                 .|.||::.....|::...|:||.:    ..|
Zfish   239 VNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNL----YVK 299

  Fly   413 KPKKKSNDQQTALAKKIAP 431
            ......:|::  |.|:.||
Zfish   300 NLDDSIDDEK--LRKEFAP 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840 21/89 (24%)
RRM_SF 261..332 CDD:302621 22/71 (31%)
pabpc1lNP_956133.1 PABP-1234 11..610 CDD:130689 72/339 (21%)
RRM1_I_PABPs 12..91 CDD:240824 21/104 (20%)
RRM2_I_PABPs 97..172 CDD:240825 23/75 (31%)
RRM3_I_PABPs 190..269 CDD:240826 8/78 (10%)
RRM4_I_PABPs 293..370 CDD:240827 8/30 (27%)
PABP 542..609 CDD:279051
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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