DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and HNRNPAB

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_112556.2 Gene:HNRNPAB / 3182 HGNCID:5034 Length:332 Species:Homo sapiens


Alignment Length:296 Identity:67/296 - (22%)
Similarity:105/296 - (35%) Gaps:78/296 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 TTAPNEKPKGKVSKKAKANANNKDEEGVKRIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLV 181
            |.||   |.|        |.|..:.:.:...:| .|:|..:|||.|..:|.:..|...|..:|.|
Human    44 TAAP---PSG--------NQNGAEGDQINASKN-EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEV 96

  Fly   182 QSIRL-------RTAG-GKQLFKHKQRKVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTP 238
            ....:       |:.| |..|||                   :.|.....|:..|.:.:...:.|
Human    97 VDCTIKMDPNTGRSRGFGFILFK-------------------DAASVEKVLDQKEHRLDGRVIDP 142

  Fly   239 -ASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGD-KGCKG 301
             .:||.|           ||..:.||||.|...||||::||.|...|||:.|....|.. ...:|
Human   143 KKAMAMK-----------KDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRG 196

  Fly   302 VAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQN 366
            ..::.|:                       |...|||:..|:....:.:....|.:...:...|.
Human   197 FVFITFK-----------------------EEEPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQ 238

  Fly   367 SAGAKKRLDKKKGKENGSLKKEGAPTGQKKKSEYRG 402
            ..|:..|.::.:|.....   .|...|.:.:|..:|
Human   239 QYGSGGRGNRNRGNRGSG---GGGGGGGQSQSWNQG 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840 18/89 (20%)
RRM_SF 261..332 CDD:302621 19/71 (27%)
HNRNPABNP_112556.2 CBFNT 1..70 CDD:311868 9/37 (24%)
RRM1_hnRNPAB 66..145 CDD:410151 21/97 (22%)
RRM2_hnRNPAB 150..229 CDD:409997 27/101 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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