DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and Rbm34

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_001014037.1 Gene:Rbm34 / 307956 RGDID:1310161 Length:428 Species:Rattus norvegicus


Alignment Length:448 Identity:127/448 - (28%)
Similarity:200/448 - (44%) Gaps:127/448 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 PIKKEPGVVEDGKVTKKSKTKPKKKTVKVPKDEVKAAVQESPKKLSAKDLAKIEKKKAKKQAQKL 80
            |:.:|        .:||.|...:::||...|   |.|:||..:|:..|.|:..:|        :|
  Rat    71 PVPQE--------TSKKRKPDDEEETVAHIK---KPALQEPARKVKVKKLSDADK--------RL 116

  Fly    81 KKQQNKLAPKEIK--TEPEAQVKVESKATKKEKVEKEPTTAPNEKPKGKVSK-KAKANANNKDEE 142
            ..:::.||..:::  .:.:.|.:..|::                  :|||:. :|...|.:.:|:
  Rat   117 ANRESALANADLEEIRQDQGQGRRRSQS------------------RGKVTDGEALDVALSLNED 163

  Fly   143 GVKRIR---NPAEE----ASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRT------------ 188
            |.:|.:   ||.||    ..||||||||:...:.:|...|:.||.|:|:|.|:            
  Rat   164 GRQRTKVPLNPEEERLKNERTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKL 228

  Fly   189 AGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQQALALNGSEFKEN-HLRVTPASMAEKFGQAKDKQ 252
            |..|:.| |..:|   |:|||||.::...|.:||..||::..|. .:||..||           :
  Rat   229 AAIKRKF-HPDQK---SINAYVVFKEERAAAKALQRNGAQIAEGFRIRVDLAS-----------E 278

  Fly   253 PSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGC-KGVAYVCFQKPDAVGLA 316
            .:.:| ||::|||:|.|...|..|.|.|..||.|..:|.:::...|. :|..||.|:..|||.||
  Rat   279 TASRD-KRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342

  Fly   317 LELNQTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKE 381
            |:||.:.|..|.:.|.|                      :.:|.|.|.|||              
  Rat   343 LKLNNSELMGRKLRVMR----------------------SVNKEKLKQQNS-------------- 371

  Fly   382 NGSLKKEGAPTGQK-----------KKSEYRGVKVDGIKKAKKPKKKSNDQQTALAKK 428
            |.|:||:|:.:.|:           .|:.:.|.|...:||.|..|||.   ||...:|
  Rat   372 NPSVKKDGSKSKQRLNFTSKEGKSHSKNAFIGEKAVLMKKKKGQKKKG---QTKKPRK 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840 34/94 (36%)
RRM_SF 261..332 CDD:302621 28/71 (39%)
Rbm34NP_001014037.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..106 13/45 (29%)
RRM 73..364 CDD:223796 102/365 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..152 5/42 (12%)
RRM1_RBM34 183..274 CDD:240840 34/94 (36%)
RRM2_RBM34 286..358 CDD:240841 28/71 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 361..428 24/83 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BIWG
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 119 1.000 Inparanoid score I4693
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004008
OrthoInspector 1 1.000 - - oto97579
orthoMCL 1 0.900 - - OOG6_103046
Panther 1 1.100 - - O PTHR23236
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.820

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