Protein Alignment CG12288 and Pabpn1l

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001107251.1
• Gene: Pabpn1l / 307920
• RGDID: 1562761
• Length: 269
• Species: Rattus norvegicus
• Alignment Length: 308
• Identity: 67/308 - (21%)
• Similarity: 121/308 - (39%)
• Gaps: 65/308 - (21%)

  Fly    85 NKLAP-------KEIKTEPEAQVKVESKATKKEKVEKEPTTAPNEKPKGKVSKKAKANANNKDEE 142
            |:|.|       :.:.::||||.......|:|..:          .|.....|:|:   .|:|..
  Rat     7 NELFPPPTEVWLQTVSSDPEAQGWGAWGRTEKTSL----------VPSAGSDKEAE---ENEDSS 58

  Fly   143 GVKRIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLN 207
            .:..:..|...|.:      |:..:.::.::|                          |:....:
  Rat    59 FLLSLLEPENLAKS------PVYNQELEAIRL--------------------------KLWTMEH 91

  Fly   208 AYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKF-GQAKDKQPSDKDAKRTIFVGSLKYSA 271
            |.|:.|.|.:.::|.....:|.:|   .::|.::...| |..|:...:|   .|:::||::.|..
  Rat    92 AEVLPEPPSVQRKATEEERAEARE---LLSPETIGCFFPGAPKENVEAD---HRSVYVGNVDYGG 150

  Fly   272 TEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQ 335
            :..:|...||.||||..:..|.|...| .||.||:.|....:|..|:.|:::....|.|.|   .
  Rat   151 SAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKV---L 212

  Fly   336 VKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKENG 383
            .|:.....:.........:.:||:. |..|.|...|.|| :..|:..|
  Rat   213 PKRTNFPGISSTDRGGLRTHSSSRA-AFLQGSLQRKPRL-RPHGQSRG 258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	10/80 (13%)
		RRM_SF	261..332	CDD:473069	23/71 (32%)
Pabpn1l	NP_001107251.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	26..54		8/40 (20%)
		RRM_SF	140..216	CDD:473069	25/78 (32%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	240..269		7/20 (35%)