Protein Alignment CG12288 and Pabpc4

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001423635.1
• Gene: Pabpc4 / 298510
• RGDID: 1305015
• Length: 660
• Species: Rattus norvegicus
• Alignment Length: 332
• Identity: 79/332 - (23%)
• Similarity: 128/332 - (38%)
• Gaps: 95/332 - (28%)

  Fly   155 STVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLNAYVVL 212
            ::::||:|..:.....|.:.|.|.|.|.|||:       |:.|                .|||..
  Rat    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG----------------YAYVNF 59

  Fly   213 EKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYSATEEQ 275
            ::|..|::|| .:|....|...:|:          ....:.|| .|.....:|:.:|..|...:.
  Rat    60 QQPADAERALDTMNFDVIKGKPIRI----------MWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 114

  Fly   276 LREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERYQVKK- 338
            |.:.||:.|.|...:.:.| :.|.||.|:|.|:..:|...|:| :|..||:||.:.|.|::.:|
  Rat   115 LYDTFSAFGNILSCKVVCD-ENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKE 178

  Fly   339 ----LGAKQ-----------------------------------VRDAAAASAASKTSSKTKAKN 364
                ||||.                                   :||.:..|......|..|.::
  Rat   179 REAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHED 243

  Fly   365 QNSA----GAKKRLDK--------KKGKENGSLKKEGAPTGQKKKSEYRGVKV------DGIKKA 411
            .|.|    ..|:...|        ||.:....||::.....|::.|.|:||.:      |.|...
  Rat   244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDE 308

  Fly   412 KKPKKKS 418
            |..|:.|
  Rat   309 KLRKEFS 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	23/88 (26%)
		RRM_SF	261..332	CDD:473069	23/71 (32%)
Pabpc4	NP_001423635.1	PABP-1234	11..640	CDD:130689	79/332 (24%)