Protein Alignment CG12288 and Pabpc1l

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: XP_038962521.1
• Gene: Pabpc1l / 296351
• RGDID: 1563142
• Length: 669
• Species: Rattus norvegicus
• Alignment Length: 250
• Identity: 63/250 - (25%)
• Similarity: 114/250 - (45%)
• Gaps: 30/250 - (12%)

  Fly   155 STVFVGNLPINTKRVQLVKLFQPYGLVQSIR-LRTAGGKQLFKHKQRKVAGSLNAYVVLEKPEIA 218
            :.::|.||.::.....|..||..:|..||:: :|.:.|       |.:..|.:|    .||.|.|
  Rat   191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNG-------QSRGFGFIN----FEKHEEA 244

  Fly   219 QQAL-ALNGSEFKENHLRVTPA-SMAEKFGQAKDKQPSDKDAKR------TIFVGSLKYSATEEQ 275
            |:|: .:||.|.....|.|..| ..||:..:.|.:....|..::      .::|.:|..|..:::
  Rat   245 QKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309

  Fly   276 LREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKP-DAVGLALELNQTLLDDRPINV----ERYQ 335
            |:|:||:.|.|...:.:.:.... ||..:|||..| :|.....|:|..::..:|:.|    .:.:
  Rat   310 LKEVFSTYGVITSAKVMTESSHS-KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEE 373

  Fly   336 VKKLGAKQVRDAAAASAASK----TSSKTKAKNQNSAGAKKRLDKKKGKENGSLK 386
            .|.:...|.|...:.|..|.    ||....|.:|.:...:.||.::...:.||::
  Rat   374 RKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQVTGCLQLRLREQNVTDRGSVE 428

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	24/83 (29%)
		RRM_SF	261..332	CDD:302621	20/75 (27%)
Pabpc1l	XP_038962521.1	PABP-1234	11..656	CDD:130689	63/249 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910