DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG12288 and SPBC365.04c

DIOPT Version :9

Sequence 1:	NP_609822.1	Gene:	CG12288 / 35027	FlyBaseID:	FBgn0032620	Length:	435	Species:	Drosophila melanogaster
Sequence 2:	NP_596033.1	Gene:	SPBC365.04c / 2540924	PomBaseID:	SPBC365.04c	Length:	233	Species:	Schizosaccharomyces pombe

Alignment Length:	255	Identity:	63/255 - (24%)
Similarity:	103/255 - (40%)	Gaps:	45/255 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    59 KLSAKDLAKIE--KKKAKKQAQKLKKQQNKLAPKEIKTEPEAQVKVESKATKKEKVEKEPTTAPN 121
            |||.|.|..:|  .||..|::|.|::.:.|:..|    ..|.:.|...|.::.|..||: ....|
pombe     4 KLSKKKLKSLEYRSKKFDKKSQSLEEHEKKVQQK----NEELEKKAADKISRDELPEKQ-LAQSN 63

  Fly   122 EKPKGKVSKKAKANANNKDEEGVKRIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRL 186
            :|.|..||........:|.::|....|.     ..:||||||.::....|...|:..|.|.|:|:
pombe    64 DKDKHSVSNPPHKTLKSKRQKGKNNDRK-----VILFVGNLPKDSSVETLQLHFKRAGQVPSVRI 123

  Fly   187 RTAGGKQLFKHKQRKVAGSLNAYVVLE----KPEIAQQALALNGSEFKENHLRV---------TP 238
            .|           .|.:|....|..:|    |.::..:||..:.:.:||..:.:         |.
pombe   124 PT-----------DKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINIELTAGGGGKTE 177

  Fly   239 ASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCG-----EIDYIRCLQ 293
            |.|    .:.|:|....|:..|.......:.:..|:..|:..:..|     ..|.:|.||
pombe   178 ARM----NKIKEKNRKWKEEMRQRVASEEQQAGEEKMARKAVADEGLESGIHPDRLRLLQ 233

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	22/94 (23%)
CG12288	NP_609822.1	RRM_SF	261..332	CDD:302621	7/38 (18%)
SPBC365.04c	NP_596033.1	RRM	18..229	CDD:223796	54/235 (23%)
SPBC365.04c	NP_596033.1	RRM_Nop6	92..167	CDD:240846	22/85 (26%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910