Protein Alignment CG12288 and Pabpc1

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_032800.2
• Gene: Pabpc1 / 18458
• MGIID: 1349722
• Length: 636
• Species: Mus musculus
• Alignment Length: 337
• Identity: 82/337 - (24%)
• Similarity: 135/337 - (40%)
• Gaps: 95/337 - (28%)

  Fly   150 PAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRL-------RTAGGKQLFKHKQRKVAGSLN 207
            |:...::::||:|..:.....|.:.|.|.|.:.|||:       |:.|                .
Mouse     6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG----------------Y 54

  Fly   208 AYVVLEKPEIAQQAL-ALNGSEFKENHLRVTPASMAEKFGQAKDKQPS-DKDAKRTIFVGSLKYS 270
            |||..::|..|::|| .:|....|...:|:          ....:.|| .|.....||:.:|..|
Mouse    55 AYVNFQQPADAERALDTMNFDVIKGKPVRI----------MWSQRDPSLRKSGVGNIFIKNLDKS 109

  Fly   271 ATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE-LNQTLLDDRPINVERY 334
            ...:.|.:.||:.|.|...:.:.| :.|.||..:|.|:..:|...|:| :|..||:||.:.|.|:
Mouse   110 IDNKALYDTFSAFGNILSCKVVCD-ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173

  Fly   335 QVKK-----LGAK-------------------QVRD-----AAAASAASKTSSKTKAKN------ 364
            :.:|     |||:                   ::::     ..|.|....|....|:|.
Mouse   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSF 238

  Fly   365 QNSAGAKKRLDKKKGKE-NG-------SLKKEGAPTGQKKKSE---------YRGVKV------D 406
            :....|:|.:|:..||| ||       :.||....|..|:|.|         |:||.:      |
Mouse   239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303

  Fly   407 GIKKAKKPKKKS 418
            ||...:..|:.|
Mouse   304 GIDDERLRKEFS 315

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	22/89 (25%)
		RRM_SF	261..332	CDD:302621	23/71 (32%)
Pabpc1	NP_032800.2	PABP-1234	11..615	CDD:130689	81/332 (24%)
		CSDE1-binding. /evidence=ECO:0000250	166..289		26/122 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910