Protein Alignment CG12288 and sqd-1

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001380080.1
• Gene: sqd-1 / 177392
• WormBaseID: WBGene00022235
• Length: 308
• Species: Caenorhabditis elegans
• Alignment Length: 297
• Identity: 61/297 - (20%)
• Similarity: 89/297 - (29%)
• Gaps: 92/297 - (30%)

  Fly   119 APNEKPKGKVSKKAKANANNKDEEGVKRIRNPAEEASTVFVGNLPINTKRVQLVKLFQPYGLVQS 183
            |.:.|..|..|:..|.|.::          ....|...:|||.:........|...|..||.|..
 Worm     3 ATDNKINGNASETIKENGHS----------TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQ 57

  Fly   184 IRL---RTAGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKF 245
            .::   ||.|..:.|            |:|.....|..:.|||......|...:.|.||...|
 Worm    58 AQVKYDRTNGRSRGF------------AFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSRE-- 108

  Fly   246 GQAKDKQPSDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGD-KGCKGVAYVCFQK 309
                         .:.:|||.|....:|:.||..|...|::|.|....|.. |..:..|::.|::
 Worm   109 -------------NKKVFVGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEE 160

  Fly   310 PDAVGLALELNQTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTK---------AKNQ 365
            .:                                        :|.|.||:||         .|..
 Worm   161 EE----------------------------------------SADKASSQTKQTFGTRECDVKKA 185

  Fly   366 NSAGAKKRLDKKKGKENGSLKKEGAPTGQKKKSEYRG 402
            ...|  ||....:|:..|.....|...|......|.|
 Worm   186 VPQG--KRFPGAQGRMPGGRGMYGGRGGNNNSGWYAG 220

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	19/83 (23%)
		RRM_SF	261..332	CDD:473069	15/71 (21%)
sqd-1	NP_001380080.1	RRM2_NsCP33_like	30..104	CDD:410187	20/85 (24%)
		RRM_SF	111..185	CDD:473069	22/113 (19%)