Protein Alignment CG12288 and sgnh-1

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_500666.2
• Gene: sgnh-1 / 177260
• WormBaseID: WBGene00020354
• Length: 177
• Species: Caenorhabditis elegans
• Alignment Length: 184
• Identity: 48/184 - (26%)
• Similarity: 81/184 - (44%)
• Gaps: 21/184 - (11%)

  Fly   209 YVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFVGSLKYSATE 273
            :|..|:.|:.:|||:                  |.|...|...:..:|...|:::||::.:.:|.
 Worm    13 FVTAEEMELLKQALS------------------ASKKYMAPTAEEQEKTDARSVYVGNVDWKSTV 59

  Fly   274 EQLREIFSSCGEIDYIRCLQDGDKGC-KGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVK 337
            .::.|.|:.||::..:...:|...|. |..|:|.|||.::|.|||.|:.|:..:|.|.|...:..
 Worm    60 SEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRTN 124

  Fly   338 KLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKENGSLKKEGAP 391
            |.|..:...|...:..:|:|......:|.....|  ........|||..|..||
 Worm   125 KPGMGRTATAQKPAHFAKSSHGKPGSHQGVTVVK--YVYVNAPINGSRSKRFAP 176

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	6/27 (22%)
		RRM_SF	261..332	CDD:473069	23/71 (32%)
sgnh-1	NP_500666.2	RRM_II_PABPs	47..119	CDD:409747	23/71 (32%)