Protein Alignment CG12288 and rsp-3

DIOPT Version :9

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_001370111.1
• Gene: rsp-3 / 176688
• WormBaseID: WBGene00004700
• Length: 258
• Species: Caenorhabditis elegans
• Alignment Length: 298
• Identity: 51/298 - (17%)
• Similarity: 100/298 - (33%)
• Gaps: 86/298 - (28%)

  Fly   153 EASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLNAYVVLEKPEI 217
            |...|:|||||.:.:..::..:|..||.::.:.:::..|...             |:|..|....
 Worm     7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAF-------------AFVEFEDHRD 58

  Fly   218 AQQAL-ALNGSEFKENHLRVT------PASMAEK----------------FGQAKDKQPSDKDAK 259
            |:.|: |.:|.||....:||.      |.....:                .|..:...|..:...
 Worm    59 AEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGY 123

  Fly   260 RTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALELNQTLL 324
            |.|..| |..:.:.:.|::.....|::.|....:||    .||
 Worm   124 RVIVEG-LPPTGSWQDLKDHMRDAGDVCYADVARDG----TGV---------------------- 161

  Fly   325 DDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKENGSLKKEG 389
                :...||:..|...:::.|....|...:| :..:.:..||:|.                  |
 Worm   162 ----VEFTRYEDVKYAVRKLDDTKFRSHEGET-AYIRVREDNSSGG------------------G 203

  Fly   390 APTGQKKKSEYRGVKVDGIKKAKKPKKKSNDQQTALAK 427
            :..|.:.:|..|..:.:.....|...::|..:..:.::
 Worm   204 SGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSRSR 241

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	20/82 (24%)
		RRM_SF	261..332	CDD:302621	10/70 (14%)
rsp-3	NP_001370111.1	RRM1_SRSF1_like	10..80	CDD:409775	21/82 (26%)
		RRM2_SRSF1_like	123..196	CDD:410013	17/104 (16%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910