Protein Alignment CG12288 and pabp-2

DIOPT Version :10

• Sequence 1: NP_609822.1
• Gene: CG12288 / 35027
• FlyBaseID: FBgn0032620
• Length: 435
• Species: Drosophila melanogaster
• Sequence 2: NP_492504.1
• Gene: pabp-2 / 172768
• WormBaseID: WBGene00003904
• Length: 205
• Species: Caenorhabditis elegans
• Alignment Length: 148
• Identity: 41/148 - (27%)
• Similarity: 68/148 - (45%)
• Gaps: 24/148 - (16%)

  Fly   202 VAGSLNAYVVLEKPEIAQQALALNGSEFK-ENHLRVTPASMAEKFGQAKDKQ----PSDK---DA 258
            :.|.||        ||.::...|...:.: ..|:.:..:|      |:...|    |.:|   ||
 Worm    27 IEGDLN--------EIEEEQKKLKAIQNEMVGHMNLNTSS------QSNSSQSLLTPEEKAEADA 77

  Fly   259 KRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALELNQT 322
            | :::||::.|.||.|::.:.|..||.:..:....|...| .||.|||.|.:.:.:..||.:..:
 Worm    78 K-SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMTDS 141

  Fly   323 LLDDRPINVERYQVKKLG 340
            ||..|.|.|:..:..|.|
 Worm   142 LLRGRQIKVDPKRTNKPG 159

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	156..237	CDD:409828	7/35 (20%)
		RRM_SF	261..332	CDD:473069	23/71 (32%)
pabp-2	NP_492504.1	RRM_SF	79..154	CDD:473069	24/74 (32%)