DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG12288 and AgaP_AGAP001930

DIOPT Version :9

Sequence 1:	NP_609822.1	Gene:	CG12288 / 35027	FlyBaseID:	FBgn0032620	Length:	435	Species:	Drosophila melanogaster
Sequence 2:	XP_003435970.1	Gene:	AgaP_AGAP001930 / 1281194	VectorBaseID:	AGAP001930	Length:	412	Species:	Anopheles gambiae

Alignment Length:	240	Identity:	53/240 - (22%)
Similarity:	89/240 - (37%)	Gaps:	72/240 - (30%)

- Green bases have known domain annotations that are detailed below.

  Fly   150 PAE----EASTVFVGNLPINTKRVQLVKLFQPYG-LVQSIRLRT--AGGKQLFKHKQRKVAGSLN 207
            |||    |...:|||.|...|....|.:.|..|| ::..:.::.  .|..:.|
Mosquito     9 PAELDDHEKGKLFVGGLSWETSHENLQRYFSRYGEVIDCVVMKNNETGRSRGF------------ 61

  Fly   208 AYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQP----SDKDAKRT-----IF 263
            .:|....||..::||. ||....:              |:..|.:|    |....|||     :|
Mosquito    62 GFVTFADPENVERALE-NGPHTLD--------------GRTIDPKPCNPRSQHKPKRTGGYPKVF 111

  Fly   264 VGSLKYSATEEQLREIFSSCGEIDYIRCLQDGD-KGCKGVAYVCFQKPDAVGLALELNQTLLDDR 327
            :|.|..:.||..||..|...|.:..:..:.|.: |..:|..::.|:...||       :....|.
Mosquito   112 LGGLPPNITETDLRSFFCRYGTVMEVVIMYDQEKKKSRGFGFLSFENESAV-------ERATTDH 169

  Fly   328 PINV--ERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGA 370
            .:::  ::.:|||   .:.||.                |||::.:
Mosquito   170 FVHISGKQVEVKK---AEPRDG----------------NQNNSNS 195

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG12288	NP_609822.1	RRM1_RBM34	155..237	CDD:240840	18/84 (21%)
CG12288	NP_609822.1	RRM_SF	261..332	CDD:302621	17/78 (22%)
AgaP_AGAP001930	XP_003435970.1	RRM_SF	19..100	CDD:302621	22/107 (21%)
AgaP_AGAP001930	XP_003435970.1	RRM2_DAZAP1	106..185	CDD:240773	19/88 (22%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910