DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and AgaP_AGAP004592

DIOPT Version :9

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_003436860.1 Gene:AgaP_AGAP004592 / 1275942 VectorBaseID:AGAP004592 Length:351 Species:Anopheles gambiae


Alignment Length:306 Identity:66/306 - (21%)
Similarity:118/306 - (38%) Gaps:67/306 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 STVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGKQLFKHKQRKVAGSLNAYVVLEKPEIAQ 219
            |.|:||.||...:...|.:.|:.||..:.|.::...|                 :|..|....|.
Mosquito     4 SRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYG-----------------FVEFEDYRDAD 51

  Fly   220 QAL-ALNGSEFKENHLRVTPASMAEKFGQA------KDKQPSDKDAK------------------ 259
            .|: .|||.|.....:.|.||.     |.|      :::...|:|.:                  
Mosquito    52 DAVYELNGKELLGERVVVEPAR-----GTARGPSGYRERDRYDRDRRGGRYDKYKSNSRNSSRYG 111

  Fly   260 ---RT---IFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALE 318
               ||   :.|.:|....:.:.|::.....||:.|    .|..|..|....|.|.....:..|:|
Mosquito   112 PPLRTEYRLVVENLSTRVSWQDLKDYMRQAGEVTY----ADAHKQRKNEGVVEFATLSDMKTAIE 172

  Fly   319 LNQTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQN-SAGAKKRLDKKKGKEN 382
                .|||..:|..|.::.:...:..|:....|.:|.:.|:::::.:: |....:|..:.:.|..
Mosquito   173 ----KLDDTELNGRRIRLVEDRGRNGRNGRGRSRSSSSRSRSRSRRRSRSRSRSRRSSRSRSKSR 233

  Fly   383 G-SLKKEGAPTGQKKKSEYRGVKVDGIKKAK----KPKKKSNDQQT 423
            . |..|.|:.:.:|.:|..|.||.....|:|    .||:..::.::
Mosquito   234 SRSKSKNGSKSPEKSRSRSRSVKSRDNSKSKSRSRSPKRDRDESRS 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 155..237 CDD:240840 20/82 (24%)
RRM_SF 261..332 CDD:302621 18/73 (25%)
AgaP_AGAP004592XP_003436860.1 RRM1_SRSF4_like 5..74 CDD:240783 22/90 (24%)
RRM2_SRSF4_like 118..189 CDD:241044 18/78 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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