DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and LOC1270474

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_309173.5 Gene:LOC1270474 / 1270474 VectorBaseID:AGAMI1_007674 Length:163 Species:Anopheles gambiae


Alignment Length:138 Identity:39/138 - (28%)
Similarity:61/138 - (44%) Gaps:21/138 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 IFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALE-LNQTLL 324
            ||||.|.|..||..:..:||..|||..:..::|...| .||.|::|::...:..||:: ||...|
Mosquito    36 IFVGGLPYDLTEGDVLCVFSQYGEIVNVNLVRDKATGKSKGFAFICYEDQRSTVLAVDNLNGIKL 100

  Fly   325 DDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAK---KRLDKKKG------K 380
            ..:.:.|:          .|:|........||..:|:.........|   .|.:|:|.      |
Mosquito   101 VGKTLRVD----------HVQDYRPPKETDKTDDETRQLYMEGCAPKAEHPRPEKQKDPTVKSEK 155

  Fly   381 ENGSLKKE 388
            .:.|:|||
Mosquito   156 RHKSIKKE 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828
RRM_SF 261..332 CDD:473069 24/71 (34%)
LOC1270474XP_309173.5 RRM_ist3_like 25..113 CDD:409845 26/86 (30%)
Blue background indicates that the domain is not in the aligned region.

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