DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and Rbm3

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:NP_446148.1 Gene:Rbm3 / 114488 RGDID:620145 Length:156 Species:Rattus norvegicus


Alignment Length:152 Identity:34/152 - (22%)
Similarity:62/152 - (40%) Gaps:20/152 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 SDKDAKRTIFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGD-KGCKGVAYVCFQKPDAVGLAL 317
            |.::.|  :|||.|.::..|:.|.:.|||.|.|..:..::|.: :..:|..::.|..|:....|:
  Rat     2 SSEEGK--LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAM 64

  Fly   318 E-LNQTLLDDRPINVERYQVKKLGAKQVRDAAAASAASKTSSKTKAKNQNSAG-AKKRLDKKKGK 380
            . :|...||.|.|.|:.      ..|..|.....:..:....::.::.....| ...|.|.:.| 
  Rat    65 RAMNGESLDGRQIRVDH------AGKSARGTRGGAFGAHGRGRSYSRGGGDQGYGSGRYDSRPG- 122

  Fly   381 ENGSLKKEGAPTGQKKKSEYRG 402
                    |...|..:..:|.|
  Rat   123 --------GYGYGYGRSRDYSG 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828
RRM_SF 261..332 CDD:473069 21/72 (29%)
Rbm3NP_446148.1 RRM_CIRBP_RBM3 6..85 CDD:409883 23/86 (27%)
Blue background indicates that the domain is not in the aligned region.

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