DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and slirp

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_002938905.4 Gene:slirp / 100489427 XenbaseID:XB-GENE-22069127 Length:99 Species:Xenopus tropicalis


Alignment Length:99 Identity:27/99 - (27%)
Similarity:47/99 - (47%) Gaps:9/99 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 AKRT--IFVGSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGC---KGVAYVCFQKPDAVGLAL 317
            ||::  :||..:.::....:|:|.||..|.:.  :||...||..   :|..:|.|...:.:..||
 Frog     5 AKKSFEVFVSRVPWTVASRELKEYFSQYGVVK--KCLLPFDKETGFHRGFCWVGFASEEGLQNAL 67

  Fly   318 ELNQTLLDDRPINVERYQVKKLGAKQVRDAAAAS 351
            :.:..||:...:.|:  |.|:|.|...|.....|
 Frog    68 QKDAHLLEGSKLQVQ--QNKRLAANTNRHGQGES 99

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828
RRM_SF 261..332 CDD:473069 18/75 (24%)
slirpXP_002938905.4 RRM_SLIRP 10..82 CDD:409688 18/73 (25%)
Blue background indicates that the domain is not in the aligned region.

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