DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12288 and hnrnpa3

DIOPT Version :10

Sequence 1:NP_609822.1 Gene:CG12288 / 35027 FlyBaseID:FBgn0032620 Length:435 Species:Drosophila melanogaster
Sequence 2:XP_031748359.1 Gene:hnrnpa3 / 100144993 XenbaseID:XB-GENE-5878765 Length:385 Species:Xenopus tropicalis


Alignment Length:283 Identity:66/283 - (23%)
Similarity:103/283 - (36%) Gaps:70/283 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 TTAPNEKPK---------GKV---------SKKAKANANNKDEE--------GVKRIRNP----- 150
            ||:|:.:|:         |||         |..|:|.:::....        |.:|...|     
 Frog     9 TTSPSHRPEWAWLAVGRAGKVLPEGRVFACSPCARAFSSSSSRSAGEAAAPFGRERCAMPRGAMD 73

  Fly   151 ---------------AEEASTVFVGNLPINTKRVQLVKLFQPYG-LVQSIRLRTAGGKQLFKHKQ 199
                           .|:...:|:|.|...|....|.:.|:.:| |...:.:|....|       
 Frog    74 DHWPSTDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTK------- 131

  Fly   200 RKVAGSLNAYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKDKQPSDKDAKRTIFV 264
            |........|..:|:.:.|..|     ...|.:...|.|.....:...|:   |......:.|||
 Frog   132 RSRGFGFVTYSCVEEVDAAMSA-----RPHKVDGRVVEPKRAVSREDSAR---PGAHLTVKKIFV 188

  Fly   265 GSLKYSATEEQLREIFSSCGEIDYIRCLQDGDKGCK-GVAYVCFQKPDAVG-LALELNQTLLDDR 327
            |.:|....|..||:.|.|.|:|:.|..::|...|.| |.|:|.|...|.|. :.::...|     
 Frog   189 GGIKEDTEEYHLRDYFQSYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT----- 248

  Fly   328 PINVERYQVKKLGAKQVRDAAAA 350
             ||....:|||..:||....|:|
 Frog   249 -INGHNCEVKKALSKQEMQTASA 270

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12288NP_609822.1 RRM1_RBM34 156..237 CDD:409828 16/81 (20%)
RRM_SF 261..332 CDD:473069 25/72 (35%)
hnrnpa3XP_031748359.1 RRM1_hnRNPA_like 94..171 CDD:409992 18/88 (20%)
RRM2_hnRNPA3 184..263 CDD:409996 28/84 (33%)
HnRNPA1 328..>344 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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