DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cse1 and Impbeta11

DIOPT Version :9

Sequence 1:NP_523588.2 Gene:Cse1 / 35016 FlyBaseID:FBgn0022213 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_788357.1 Gene:Impbeta11 / 36732 FlyBaseID:FBgn0284254 Length:1075 Species:Drosophila melanogaster


Alignment Length:1140 Identity:214/1140 - (18%)
Similarity:395/1140 - (34%) Gaps:296/1140 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QLLAGYLQQTLSADPNVRRPAEKLLESTELQQNY--PILLLNL---------IDKAQMDMTTRVA 62
            ||:|..||...:....:.:.||..|...|.|..:  .|..|::         ......::..|..
  Fly    22 QLVAQTLQAATNPSHEIVQKAEAQLREWEQQPGFFPTIARLSMRRGGGGDVVSSTEDSEVKVRWM 86

  Fly    63 GAIAFKNYIKRNWAAH----LDSDGPDRIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSI--- 120
            .|:..||.::|.|..:    |.::...:|.|           .|:.|.......|::..|::   
  Fly    87 AAVYLKNGVERYWRPNSRQELPAEQKQQIRE-----------VLLRHYDAEEVPQVALQVAVLLG 140

  Fly   121 -IGKYDFPKKWPQLIDEMVERFAS----GDFNVINGVLQTAHSLFKRY--RYEFKSQALWEEIKF 178
             :.:.|:|:.||.|:..::::..|    ||..:...:|...|.:.|..  |.....|..::|:..
  Fly   141 RLARTDYPRFWPDLLPTLMKQLQSCGTDGDSALQQRILIVLHYVLKALASRRLMAEQRAFQELGL 205

  Fly   179 -VLDRMA----KPLTDLLQATMQLTKVHENNAGALKVIYGSLVLVNK----VFFSLNSQDLPEFF 234
             :...:|    .|||     |..|..|.::.|.||..:..:.|::..    |.:....   |...
  Fly   206 QIFGYLAWDIWAPLT-----TRFLQLVRKDEAMALNALQRAYVVMRTLRKLVVYGCAK---PYKS 262

  Fly   235 EDNINTWMGAFIQQL----------------AADVPSLRTADDEDAGVLEHLRAQVCENICLYAK 283
            .|::|     |::||                .:..|...|...|    ||....::.:.:....:
  Fly   263 TDHMN-----FVEQLFQRLRQCLELRYELKVGSATPGTATILTE----LERFVIKMMKTLNELME 318

  Fly   284 KYDEEFKPFMEQFVTAVWE------------LLVKTSLHTKYDSLVSHALQFL------------ 324
            ::...|    .:||....|            |:........:.:....||..|            
  Fly   319 RHSVSF----ARFVPVALEFSFHYVFHEGTALIFDAGDRINFKNFAIQALNMLKGIMLSGNDSIS 379

  Fly   325 -----------SVVADRQHYQSIFENPEILAQICDKVVIPNLDIRPSDEEIFEDSPEEYIRRDIE 378
                       .::|.....|:.|...|.:..||:|:|.....:...:.|.::..||.|.:.|..
  Fly   380 APPEGGAHIEDELLASAAQSQAKFFTAERVTYICEKIVTHYFLLTQQELEEWQQDPEGYDQDDGG 444

  Fly   379 GSDIDTRRRAACDLVKTLSINFEQKIFGIFGQYLE----------RLLTKYKENPATNWRS---K 430
            |   |..:.|....|:||       .|..|.|:.:          |...:.:..|.::.::   |
  Fly   445 G---DAWKYALRPSVETL-------YFTCFTQHSQVMIPEVLRFVRRAQQLQLTPESDLKAILLK 499

  Fly   431 DTAIYLVTSWASRGGTQK--HGITQTSELVPLPEFCAQQIIPELERPNINEFPVLKAAAIKYVMV 493
            | |||.....|:.....|  .|...||           |::.||....:| |.:|:...|..|..
  Fly   500 D-AIYNAVGQAAFHFFNKLDFGAWLTS-----------QLLAELRVEALN-FRILRRRIIWLVGH 551

  Fly   494 FRSI-----LGPQVLASCLPQLIRHLPAESSVVHSYAACSVEKILSMRDASNAIVFGPQILAPYT 553
            :..:     |.|....:|| .|:|  |.|.......||.::..::      :...|.|:...||.
  Fly   552 WVGVQLPRELRPLAYEACL-HLLR--PQEDMPTRLAAARTLNLLI------DDFEFMPEAFHPYF 607

  Fly   554 TELISGLFATLSLPGSGENEYVMKAIMRSFSVLQSAAMPFMGVALPRLTEILTQVAKNPSRPQFN 618
            ..|...||..|...|..:.:.|:              :..|.:.:.:::|.:     .|...||.
  Fly   608 PSLFEALFLLLHEAGECDTKIVV--------------LGTMTLLVEKMSEYI-----EPQALQFI 653

  Fly   619 HYL--------FETLALCIKIVCHADSSAVSSFEEALFPVFQGILQQDIVEFM-PYVFQMLSVLL 674
            .||        ...|..|         :.:.:.|:.:..:      :|:.|.| |:::.::.:..
  Fly   654 AYLPLLWRESEEHDLLRC---------AIIGTLEQLVRTI------RDVPEPMKPFLYSVIELST 703

  Fly   675 EMRE------------------GTGTIPEPYWALFPCLLS------PALWDRTGNVTPLIRLISA 715
            ::::                  |..|      ||.|.||.      |.:...:.|:..:::||.|
  Fly   704 DLQQPSHVYLIEDGIMLWLAVIGNST------ALTPELLGLCDHLLPIIEMSSENLRTVLQLIHA 762

  Fly   716 FI-KQGSAQIQALGKLSGILGIFQKMIASKANDH-EGFYLLQNLLSYYPPAEIQTNLRQI---FG 775
            :| ....|.:...|:     |.....:.|..:.. ||...:..::......:....||.:   ..
  Fly   763 YILLDAQAYLSRYGE-----GFVAYCVRSFEDIRVEGIIAMLRIIETCLKTDAALGLRLVRPALP 822

  Fly   776 LLFQRLSLSKTPKYLSGIIIFFSFYVIKFSGSQMAQLIDEI-QPNLFGMLLDRVFITEMGKIP-- 837
            .:||::.|.:......|..:......:....|....::.:: |.:....:|| |:|.....:|  
  Fly   823 FVFQQVCLKQEYPMTMGWYLTIVARTLLIDQSVFMSVVQQLPQADALARILD-VWIEMFPMVPDT 886

  Fly   838 KEQDRKMVAVGVTK-------LLTETPEILQ-----------QQYAT-------FWPRLLHSLID 877
            ..:.||:..:....       ||...|.|||           :|||.       ..||...||:.
  Fly   887 HAEKRKLFCLAFASIFGSNELLLARLPHILQLVDETLGEVMDKQYAATEEGASQATPRFYDSLVI 951

  Fly   878 LFERPPEKLMGLEIGETAGVAED-PDAGYQVAFAQLTHAQPNQQDHLAEIKD------ARQFLAT 935
            ..|...:.|. .::|...||:|: ...||.   |:..|...::|   ..:||      ..::|..
  Fly   952 HDEHELDDLQ-QQLGSGGGVSEEFHTKGYP---AKTYHDDRHRQ---LVLKDPVYKIPLTEYLKW 1009

  Fly   936 SLSKF-AQARAGEFSTLLSPLEPEYKQVLQKYCDQ 969
            .|... ||..:..:..::..:.||.::.:..|.:|
  Fly  1010 QLQSLQAQLGSQRYEQVMCSVVPEVRERITMYIEQ 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cse1NP_523588.2 IBN_N 29..105 CDD:281761 17/90 (19%)
Cse1 159..528 CDD:285678 87/450 (19%)
CAS_CSE1 530..966 CDD:281384 90/509 (18%)
Impbeta11NP_788357.1 CSE1 23..>768 CDD:227944 158/848 (19%)
IBN_N 42..120 CDD:197981 16/88 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446875
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5657
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10997
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.930

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