DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cse1 and ipo8

DIOPT Version :9

Sequence 1:NP_523588.2 Gene:Cse1 / 35016 FlyBaseID:FBgn0022213 Length:975 Species:Drosophila melanogaster
Sequence 2:XP_031754525.1 Gene:ipo8 / 100497558 XenbaseID:XB-GENE-494871 Length:1023 Species:Xenopus tropicalis


Alignment Length:1143 Identity:229/1143 - (20%)
Similarity:395/1143 - (34%) Gaps:345/1143 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LQLLAGYLQQTLSADPNVRRPAEKLLESTELQQNYPIL-----LLNLIDKAQMDMTTRVAGAIAF 67
            :|.|.|      :.||.:|..||     |||.|:|.|:     ||.:|...|::...|.|.||..
 Frog     7 IQALRG------TIDPKMRLAAE-----TELNQSYKIISFAPTLLQIIVSDQVEFPVRQAAAIYL 60

  Fly    68 KNYIKRNWAAHLDSDG----PDRIHESDRNTIKTLIVTLMLHSPVALQKQLSDAVSIIGKYDFPK 128
            ||.:.:.|.......|    |..|||:||:.|:..||..::.||..::.||:..:.:|.|:|||.
 Frog    61 KNMVSQYWPDREPQPGEVVFPFNIHENDRHQIRENIVEGIIRSPDLVRAQLTLCLRVIIKHDFPG 125

  Fly   129 KWPQLIDEMVERFASGDFNVINGVLQTAHSLFKRYRYEFKSQ--ALWEEIKFVLDRMAKPLTDLL 191
            :|..::|::.......:.....|.|...:.|.|.|.|:...:  .|...::..|.|:.:.:..||
 Frog   126 RWTGVVDKIGFYLQQQNTTSWLGSLLCLYQLVKTYEYKKADERAPLIAAMQIFLPRLQQQIVHLL 190

  Fly   192 QATMQLTKVHENNAGALKVIYGSLVLVNKVFFSLNSQDLPEFFEDN--INTWMGAFIQQLAADVP 254
            .           :.....|:....:|  |:|::|....||....:|  :..|||.|......|||
 Frog   191 P-----------DPSHYSVLMQKQIL--KIFYALIQYALPLQLVNNQMMTQWMGIFSAIADRDVP 242

  Fly   255 SLRTADDEDAGVLEHLRAQVCENICLYAKKYDEEFKPFMEQFVTAVWELLVKTSLHTKYDS---- 315
            .            |.|:.             ||:.:|.:..:....|.|.|.|.|..:|.|    
 Frog   243 P------------ETLQV-------------DEDDRPELIWWKCKKWALHVITRLFERYGSPGSV 282

  Fly   316 -----------LVSHA---LQFLSVVADRQHYQSIFENPEILAQ--------------------- 345
                       |.::|   ||.|..|.| ||.|..:..|.:|.|                     
 Frog   283 TKEYFEFSEYFLKTYAVGVLQVLLKVLD-QHRQKHYVAPRVLQQTLNYLNLGVSHAVTWKQLKPH 346

  Fly   346 ---ICDKVVIPNLDIRPSDEEIFEDSPEEYIRRDIE-GSDIDTRRRAACDLVKTLSINFEQKIFG 406
               |.::|:.|.:..|..||::::|.|.||||...: ..|..:...||.:|:.|.| ...:::..
 Frog   347 MKGISEEVIFPLMCYRDEDEDLWQDDPYEYIRMKFDVFEDYVSPATAAQNLLYTAS-KKRKEVLP 410

  Fly   407 IFGQYLERLLTKYKENPATNWRSKDTAIYLVTSWASRGGTQKHGITQTSELVPLPEFCAQQIIPE 471
            ....:..::.|....:|    |..|.|:::|.|.|..       :.:.|......|...|..:  
 Frog   411 KMMTFCYQIFTGTSVDP----RKIDGALHVVGSLAEI-------LLKKSVYKDQMEVFVQNHV-- 462

  Fly   472 LERPNINEFPVLKAAAIKYVMVFRSILGPQVLASCLPQLIRHLPAESSVVHSYAACSVEKILSMR 536
                    ||           :|.|.||.....||.            |:||::.......:::|
 Frog   463 --------FP-----------LFMSDLGYLRARSCW------------VLHSFSTLKFHNEMNLR 496

  Fly   537 D----ASNAIVFGPQILAPYTTELISGLFATLSLPGSGENEYVMKAIMRSF-------------- 583
            :    |..:::...::  |...|      |.::|.....|:...|..||.|              
 Frog   497 NGVQLAKKSLIEDKEL--PVKVE------AAIALQSLISNQSAAKEYMRLFIRPVMQELLHIVRE 553

  Fly   584 -------SVLQSAAMPFMGVALP-------RLTEILTQVAKNPSRPQFNHY------LFETLALC 628
                   :|:|.....:.....|       .||||..:|.::....:....      :..|:.:.
 Frog   554 TENDDLTNVIQKMICEYSQEVAPIAVDMTRHLTEIFVKVLQSDEYDEVEDKTVMAMGILHTIDIV 618

  Fly   629 IKIVCHADSSAV-SSFEEALFPVFQGILQQDIVEFMPYVFQMLSVLLEMREGTGTIPEPYWALFP 692
            :.:|  .|...: ...|.....:...:||:.|:||..   ::||:...:...|            
 Frog   619 LTVV--EDHKEIKQQLEGICLQIIGLVLQKHIIEFYE---EILSLSYSLTNQT------------ 666

  Fly   693 CLLSPALWDRTGNVTPLIRLISAFIKQGSAQIQALGKLSGIL-GIFQKMIASKANDHEGFYLLQN 756
              :||.:|                            :|.||| .:|||      :.:|.|..:..
 Frog   667 --ISPQMW----------------------------QLLGILFEVFQK------DCYEYFTDMMP 695

  Fly   757 LLSYYPPAEIQT------NLRQIFGL-------------------LFQRLSLSKTPKYLSGIIIF 796
            ||..|...:..|      |:..|:.:                   |.:.:.|....:.:...|..
 Frog   696 LLHNYITVDTNTLLSNPKNVEIIYTMCKKVLTGDAGEDAECHAAKLLEVIILQCRGRGIDQCIPL 760

  Fly   797 FSFYVIK-----FSGSQMAQLIDEI-------QPNLFGMLLDRV------------FITE----- 832
            |...|::     ...|::..:..::       .|:|....|:::            ||.:     
 Frog   761 FVEAVLERLTRGVKSSELRTMCLQVVIACLYYNPSLLLNTLEQMCFPHSSEPITAQFINQWVNDT 825

  Fly   833 ---MGKIPKEQDRKMVAVGVTKL--LTETPEILQQQYATFWPRLLHSLIDLFE----------RP 882
               :|.    .|||:..:|::.|  |...|..:....:...|.:|...:.|.:          |.
 Frog   826 DCFLGL----HDRKICIIGLSILMELPNRPPAVSAVASVLVPSILLLFLGLRQVCATRDHSDHRA 886

  Fly   883 PEKLMGLEIGETAGVAEDPDAGYQVAFAQLTHAQPNQQDH--------------------LAEIK 927
            |.::...||.|:..:|.|.:.....|..|.|.....::|.                    ..:..
 Frog   887 PSRVPKAEIEESEEIASDEEEANGQAMQQNTGEDAEEEDEDWDDEVLEETALEGFSTPLDCEDAL 951

  Fly   928 DARQFLATSLSKFAQARAGEFSTLLSPLEPEYKQVLQK 965
            |..||...:|.......|..:..|:..|..:.|:.||:
 Frog   952 DEYQFFTNALLNVQSRDAPWYHLLMEKLSNDQKKQLQE 989

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cse1NP_523588.2 IBN_N 29..105 CDD:281761 29/84 (35%)
Cse1 159..528 CDD:285678 89/415 (21%)
CAS_CSE1 530..966 CDD:281384 92/565 (16%)
ipo8XP_031754525.1 SXM1 15..883 CDD:227943 205/1021 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.