DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17928 and FAD6

DIOPT Version :9

Sequence 1:NP_001260515.1 Gene:CG17928 / 35009 FlyBaseID:FBgn0032603 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_194824.1 Gene:FAD6 / 829220 AraportID:AT4G30950 Length:448 Species:Arabidopsis thaliana


Alignment Length:384 Identity:77/384 - (20%)
Similarity:130/384 - (33%) Gaps:113/384 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 EENGFYMTLKRRVREKLRK-------IDYSPTKKTEFLHLGILVSVFLFSWAGTVLDSLIFKG-- 170
            |..||     |::.|.|.:       :|..|.:..|...|..|.||.:...:.|:...:|.|.  
plant    90 ESYGF-----RQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPW 149

  Fly   171 -LAGLALCWVATSTHNYF-------HQ--------RDSWRMYTFNLTMMNFRNWRISHALSHHVY 219
             |..||..|..|:...:|       |:        .|......|...:..:..||..|. .||..
plant   150 YLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHD-RHHAK 213

  Fly   220 ANSL-HDLEMSMFEPFLCWIPDSHYASKPQRLISVVISPVVYVVLFQGQFLIRLVLSL------- 276
            .|.| ||   :.::|    :|...:.|          |||:...:..|...||..||:       
plant   214 TNMLVHD---TAWQP----VPPEEFES----------SPVMRKAIIFGYGPIRPWLSIAHWVNWH 261

  Fly   277 -------------TKRNVLCWDDLIGFSLPIFIYLSTGVSLLSALLSWEIIISVGSFIFGLVGLT 328
                         .|.::.|....:....|:.:|   .|.:|..:..|  ::....:.|.:...|
plant   262 FNLKKFRASEVNRVKISLACVFAFMAVGWPLIVY---KVGILGWVKFW--LMPWLGYHFWMSTFT 321

  Fly   329 AAHHD-PRI-LHDGDAQRQDFDWGLYQVDTIIDRGDI-----KWSDLLVLTH-FGEHALHHLFPT 385
            ..||. |.| ....|      :|...|...   .|.:     .|.:  :|.| ...|..||:.|.
plant   322 MVHHTAPHIPFKPAD------EWNAAQAQL---NGTVHCDYPSWIE--ILCHDINVHIPHHISPR 375

  Fly   386 LDHGVLKHLYPELRKTMKEFDVELREINHWSHIKGQNQQLLRT----------EKNPIP 434
            :....|:..:..:::...::          :::...|.:|::|          |:|.||
plant   376 IPSYNLRAAHESIQENWGKY----------TNLATWNWRLMKTIMTVCHVYDKEENYIP 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17928NP_001260515.1 Cyt-b5 33..103 CDD:278597
Membrane-FADS-like 151..388 CDD:294412 58/283 (20%)
FA_desaturase 171..412 CDD:278890 54/284 (19%)
FAD6NP_194824.1 PLN02598 1..447 CDD:215323 77/384 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3239
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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