DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG17928 and SLD2

DIOPT Version :9

Sequence 1:	NP_001260515.1	Gene:	CG17928 / 35009	FlyBaseID:	FBgn0032603	Length:	441	Species:	Drosophila melanogaster
Sequence 2:	NP_182144.1	Gene:	SLD2 / 819228	AraportID:	AT2G46210	Length:	449	Species:	Arabidopsis thaliana

Alignment Length:	477	Identity:	110/477 - (23%)
Similarity:	184/477 - (38%)	Gaps:	132/477 - (27%)

- Green bases have known domain annotations that are detailed below.

  Fly    27 RPITSESWLEGKNVDDEAEGLW-RINDTLYDLSDFAARHPGGSSWIECTRGTDITEPFES----- 85
            |.:|||...:.....|    || .|...:||:||:...||||.:.|....|.|:|:.|.:
plant     8 RYVTSEDLKKHNKPGD----LWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAFIAYHPGT 68

  Fly    86 --HHIEERARGMLSKFEVRK---AARPRNYKFTLEENGFYMTLKRRVREKLRKID-YSPTKKTEF 144
              ||:|:...|    :.||.   :...|:|:....|..     ||.:.:|...:. |:.|
plant    69 AWHHLEKLHNG----YHVRDHHVSDVSRDYRRLAAEFS-----KRGLFDKKGHVTLYTLT----- 119

  Fly   145 LHLGILVSVFLFS-------WAGTVLDSLIFKGLAGLALCWVATS--THNYFHQRDSWRMYTFN- 199
             .:|::::..|:.       ||..:...|       |.|.|:.::  .|:..|       ||..
plant   120 -CVGVMLAAVLYGVLACTSIWAHLISAVL-------LGLLWIQSAYVGHDSGH-------YTVTS 169

  Fly   200 ---------------LTMMNFRNWRISHALSHHVYANSL-HDLEMSMFEPFLCWIPDSHYASKPQ 248
                           ||.::...|:.:|. :||:..||| ||.::.....|.  :....:.|...
plant   170 TKPCNKLIQLLSGNCLTGISIAWWKWTHN-AHHIACNSLDHDPDLQHIPIFA--VSTKFFNSMTS 231

  Fly   249 RLI--SVVISPVV-----------YVVLFQGQ---FLIRLVLSLTKRNVLCWDDLIGFSLPIFIY 297
            |..  .:...|:.           |.|:..|:   |:...:|..:||:|.  |..:..: .|.::
plant   232 RFYGRKLTFDPLARFLISYQHWTFYPVMCVGRINLFIQTFLLLFSKRHVP--DRALNIA-GILVF 293

  Fly   298 LSTGVSLLSALLSW-EIIISVGSFIFGLVGLTAAHHDPRILH-----------DGDAQRQDFDWG 350
            .:....|:|.|.:| |..|    |:|....:||..|....|:           :|:      ||.
plant   294 WTWFPLLVSFLPNWQERFI----FVFVSFAVTAIQHVQFCLNHFAADVYTGPPNGN------DWF 348

  Fly   351 LYQVDTIID---RGDIKWSDLLVLTHFG--EHAL-HHLFPTLDHGVLKHLYPELRKTMKEFDVEL 409
            ..|....:|   |..:.|       .||  :..| |||||.|....|:.:.|.:::..|:.::..
plant   349 EKQTAGTLDISCRSFMDW-------FFGGLQFQLEHHLFPRLPRCHLRTVSPVVKELCKKHNLPY 406

  Fly   410 REINHWSHIKGQNQQLLRTEKN 431
            |.::.|.    .|...:||.||
plant   407 RSLSWWE----ANVWTIRTLKN 424

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG17928	NP_001260515.1	Cyt-b5	33..103	CDD:278597	22/77 (29%)
		Membrane-FADS-like	151..388	CDD:294412	64/296 (22%)
		FA_desaturase	171..412	CDD:278890	64/293 (22%)
SLD2	NP_182144.1	Cyt-b5	11..82	CDD:395121	24/78 (31%)
SLD2	NP_182144.1	Delta6-FADS-like	142..404	CDD:239583	64/298 (21%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG3239
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	45	1.000	Inparanoid score	I2674
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1060606at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.870