DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17928 and SLD2

DIOPT Version :10

Sequence 1:NP_609810.1 Gene:CG17928 / 35009 FlyBaseID:FBgn0032603 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_182144.1 Gene:SLD2 / 819228 AraportID:AT2G46210 Length:449 Species:Arabidopsis thaliana


Alignment Length:477 Identity:110/477 - (23%)
Similarity:184/477 - (38%) Gaps:132/477 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 RPITSESWLEGKNVDDEAEGLW-RINDTLYDLSDFAARHPGGSSWIECTRGTDITEPFES----- 85
            |.:|||...:.....|    || .|...:||:||:...||||.:.|....|.|:|:.|.:     
plant     8 RYVTSEDLKKHNKPGD----LWISIQGKVYDVSDWVKSHPGGEAAILNLAGQDVTDAFIAYHPGT 68

  Fly    86 --HHIEERARGMLSKFEVRK---AARPRNYKFTLEENGFYMTLKRRVREKLRKID-YSPTKKTEF 144
              ||:|:...|    :.||.   :...|:|:....|..     ||.:.:|...:. |:.|     
plant    69 AWHHLEKLHNG----YHVRDHHVSDVSRDYRRLAAEFS-----KRGLFDKKGHVTLYTLT----- 119

  Fly   145 LHLGILVSVFLFS-------WAGTVLDSLIFKGLAGLALCWVATS--THNYFHQRDSWRMYTFN- 199
             .:|::::..|:.       ||..:...|       |.|.|:.::  .|:..|       ||.. 
plant   120 -CVGVMLAAVLYGVLACTSIWAHLISAVL-------LGLLWIQSAYVGHDSGH-------YTVTS 169

  Fly   200 ---------------LTMMNFRNWRISHALSHHVYANSL-HDLEMSMFEPFLCWIPDSHYASKPQ 248
                           ||.::...|:.:|. :||:..||| ||.::.....|.  :....:.|...
plant   170 TKPCNKLIQLLSGNCLTGISIAWWKWTHN-AHHIACNSLDHDPDLQHIPIFA--VSTKFFNSMTS 231

  Fly   249 RLI--SVVISPVV-----------YVVLFQGQ---FLIRLVLSLTKRNVLCWDDLIGFSLPIFIY 297
            |..  .:...|:.           |.|:..|:   |:...:|..:||:|.  |..:..: .|.::
plant   232 RFYGRKLTFDPLARFLISYQHWTFYPVMCVGRINLFIQTFLLLFSKRHVP--DRALNIA-GILVF 293

  Fly   298 LSTGVSLLSALLSW-EIIISVGSFIFGLVGLTAAHHDPRILH-----------DGDAQRQDFDWG 350
            .:....|:|.|.:| |..|    |:|....:||..|....|:           :|:      ||.
plant   294 WTWFPLLVSFLPNWQERFI----FVFVSFAVTAIQHVQFCLNHFAADVYTGPPNGN------DWF 348

  Fly   351 LYQVDTIID---RGDIKWSDLLVLTHFG--EHAL-HHLFPTLDHGVLKHLYPELRKTMKEFDVEL 409
            ..|....:|   |..:.|       .||  :..| |||||.|....|:.:.|.:::..|:.::..
plant   349 EKQTAGTLDISCRSFMDW-------FFGGLQFQLEHHLFPRLPRCHLRTVSPVVKELCKKHNLPY 406

  Fly   410 REINHWSHIKGQNQQLLRTEKN 431
            |.::.|.    .|...:||.||
plant   407 RSLSWWE----ANVWTIRTLKN 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17928NP_609810.1 Cyt-b5 42..105 CDD:459698 23/73 (32%)
DesA 111..427 CDD:442471 77/376 (20%)
SLD2NP_182144.1 Cyt-b5 11..86 CDD:459698 26/82 (32%)
Delta6-FADS-like 142..404 CDD:239583 64/298 (21%)

Return to query results.
Submit another query.