DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17928 and Fads2

DIOPT Version :9

Sequence 1:NP_001260515.1 Gene:CG17928 / 35009 FlyBaseID:FBgn0032603 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_062673.1 Gene:Fads2 / 56473 MGIID:1930079 Length:444 Species:Mus musculus


Alignment Length:444 Identity:89/444 - (20%)
Similarity:167/444 - (37%) Gaps:99/444 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 PSYR----QHRPITSESWLEGKNVDDEAEGLWRINDTLYDLSDFAARHPGGSSWIECTRGTDITE 81
            |::|    |...:.::.||.             |:..:|:::.::.|||||...|....|.|.|:
Mouse    19 PTFRWEEIQKHNLRTDRWLV-------------IDRKVYNVTKWSQRHPGGHRVIGHYSGEDATD 70

  Fly    82 PFESHHIEERARG------MLSKFEVRKAARPRNYKFTLEENGFYMTLKRRVREKLRKIDYSPTK 140
            .|.:.|::....|      ::.:....:.:..|.....:.|:  :..||:...:       ....
Mouse    71 AFRAFHLDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITED--FRALKKTAED-------MNLF 126

  Fly   141 KTEFLHLGILVSVFLFSWAGTVLDSLIFKGLAGLALCWV---------ATS-------THNYFH- 188
            ||..|...:|:|..:      |::||.:..|:.....|:         |||       .|:|.| 
Mouse   127 KTNHLFFFLLLSHII------VMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQHDYGHL 185

  Fly   189 ---QRDSWRMYTFNLTMMNFR----NWRISHALSHHVYAN---------SLHDLEMSMFEPF--- 234
               ::..|........:.:.:    ||.......||...|         |||...:..::|.   
Mouse   186 SVYKKSIWNHVVHKFVIGHLKGASANWWNHRHFQHHAKPNIFHKDPDIKSLHVFVLGEWQPLEYG 250

  Fly   235 ---LCWIPDSHYASKPQRLISVVISPVVYVVLFQGQFLIRLVLSLTKRNVLCWDDL---IGFSLP 293
               |.::|.:|    ......::..|::..:.||.|.::.::   ::|:   |.||   |.:.:.
Mouse   251 KKKLKYLPYNH----QHEYFFLIGPPLLIPMYFQYQIIMTMI---SRRD---WVDLAWAISYYMR 305

  Fly   294 IFIYLSTGVSLLSALLSWEIIISVGSFIFGLVGLTAAHHDPRILH-DGDAQRQDFDWGLYQVDTI 357
            .|........:|.||:....|..:.|..|  |.:|..:|  .::. |.|..|   ||...|:...
Mouse   306 FFYTYIPFYGILGALVFLNFIRFLESHWF--VWVTQMNH--LVMEIDLDHYR---DWFSSQLAAT 363

  Fly   358 IDRGDIKWSDLLVLTHFGEHALHHLFPTLDHGVLKHLYPELRKTMKEFDVELRE 411
            .:.....::|.. ..|......||||||:....|..:.|.::....:..:|.:|
Mouse   364 CNVEQSFFNDWF-SGHLNFQIEHHLFPTMPRHNLHKIAPLVKSLCAKHGIEYQE 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17928NP_001260515.1 Cyt-b5 33..103 CDD:278597 16/75 (21%)
Membrane-FADS-like 151..388 CDD:294412 58/279 (21%)
FA_desaturase 171..412 CDD:278890 58/284 (20%)
Fads2NP_062673.1 PLN03199 1..439 CDD:178740 89/444 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21 1/1 (100%)
Cyt-b5 20..94 CDD:278597 18/86 (21%)
Delta6-FADS-like 162..412 CDD:239583 54/267 (20%)
Histidine box-1 180..184 2/3 (67%)
Histidine box-2 217..221 0/3 (0%)
Histidine box-3 382..386 0/3 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3239
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 56 1.000 Inparanoid score I5430
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1060606at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.870

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