DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17928 and fads2

DIOPT Version :9

Sequence 1:NP_001260515.1 Gene:CG17928 / 35009 FlyBaseID:FBgn0032603 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_012816067.1 Gene:fads2 / 100145314 XenbaseID:XB-GENE-1010230 Length:446 Species:Xenopus tropicalis


Alignment Length:453 Identity:95/453 - (20%)
Similarity:162/453 - (35%) Gaps:112/453 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 TSESWLEGKNVDDEAEGLWR--------------INDTLYDLSDFAARHPGGSSWIECTRGTDIT 80
            :.|....|..|..||...|.              |...:|:::.:...||||...|....|.|.|
 Frog     7 SGEGCSSGNCVKPEARYSWEEIQKHNLKTDKWLVIERKVYNITQWVKCHPGGMRVIGHYAGEDAT 71

  Fly    81 EPFESHHIEERARGMLSKFEVRKAARPRNYKFTLEENGFYMTLKRRVREKLRKIDYSPTKKTEFL 145
            :.|.:.|.:        |..|||..:|. |...|.||   ...:.|.:...:..|:...:||. .
 Frog    72 DAFHAFHPD--------KNFVRKFLKPL-YVGELAEN---EPSQDRDKNAQQVEDFRALRKTA-E 123

  Fly   146 HLGILVS------VFLF------------------SWAGTVLDSL---IFKGLAGLALCWVATST 183
            .:|:..|      |:||                  .|..|:|..|   |.:..||    |:   .
 Frog   124 DMGLFKSNPAFFIVYLFHILLIEFLAWCTLHYFGTGWIPTILTVLLLTISQAQAG----WL---Q 181

  Fly   184 HNYFH----QRDSWRMYTFNLTMMNFR----NWRISHALSHHVYANSLH-DLEMSMFEPFLC--- 236
            |::.|    ::..|........:.:.:    ||.......||...|... |.:::|...|:.   
 Frog   182 HDFGHLSVFKKSKWNHLIHKFIIGHLKGASANWWNHRHFQHHAKPNIFRKDPDVNMVNVFVLGDT 246

  Fly   237 -----------WIPDSHYASKPQRLISVVISPVVYVVLFQGQFLIRLVLSLTKRNVLCWDDL--- 287
                       ::|.:|     |.|...:|.|.:.:.::   |.|:::.::..|.  .|.||   
 Frog   247 QPVEFGKKRIKYLPYNH-----QHLYFFLIGPPLLIPIY---FTIQIMKTMITRK--DWVDLAWS 301

  Fly   288 IGFSLPIFIYLSTGVSLLSALLSWEIIISVGSFIFGLVGLTAAHHDPRILHDGDAQRQDFDWGLY 352
            :.:....||.......:|.:|.....:..:.|..|  |.:|..:|.|.::   |.::.. ||...
 Frog   302 VSYYARFFITFVPFYGVLGSLALLNAVRFIESHWF--VWVTQMNHLPMVI---DHEKYK-DWLET 360

  Fly   353 QVDTIIDRGDIKWSDLLVLTHFGEHALHHLFPTLDHGVLKHLY----PELRKTMKEFDVELRE 411
            |:....:.....::|.. ..|......||||||:.    :|.|    |.:|....:::|...|
 Frog   361 QLAATCNIEPSFFNDWF-SGHLNFQIEHHLFPTMP----RHNYWKIAPLVRSLCSKYNVTYEE 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17928NP_001260515.1 Cyt-b5 33..103 CDD:278597 19/83 (23%)
Membrane-FADS-like 151..388 CDD:294412 57/289 (20%)
FA_desaturase 171..412 CDD:278890 54/271 (20%)
fads2XP_012816067.1 PLN03199 1..434 CDD:178740 95/453 (21%)
Delta6-FADS-like 164..414 CDD:239583 55/277 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1060606at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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