DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyt-b5-r and fads2

DIOPT Version :9

Sequence 1:NP_001260514.1 Gene:Cyt-b5-r / 35008 FlyBaseID:FBgn0000406 Length:436 Species:Drosophila melanogaster
Sequence 2:XP_012816067.1 Gene:fads2 / 100145314 XenbaseID:XB-GENE-1010230 Length:446 Species:Xenopus tropicalis


Alignment Length:405 Identity:81/405 - (20%)
Similarity:159/405 - (39%) Gaps:82/405 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 HSWQKGKRQDDGAEGLWRINDGIYDFTSFIDKHPGGPFWIRETKGTDITEAFEAHHLTTAPEKMI 91
            :||::.::.:...:....|...:|:.|.::..||||...|....|.|.|:||.|.|    |:|..
 Frog    23 YSWEEIQKHNLKTDKWLVIERKVYNITQWVKCHPGGMRVIGHYAGEDATDAFHAFH----PDKNF 83

  Fly    92 AKYKVRDAAEPRIYTLTLEEGGFYKTLKERVREQLKTIDKRPKKKSD-------------LIHLG 143
                ||...:| :|...|.|.   :..::|.:...:..|.|..:|:.             :::|.
 Frog    84 ----VRKFLKP-LYVGELAEN---EPSQDRDKNAQQVEDFRALRKTAEDMGLFKSNPAFFIVYLF 140

  Fly   144 LVVSLYLLGIASAKY------NSLLALVLASVALCWTVIVSHNYFH----RRDNWQ--MYAFNLG 196
            .::.:..|...:..|      .::|.::|.:::......:.|::.|    ::..|.  ::.|.:|
 Frog   141 HILLIEFLAWCTLHYFGTGWIPTILTVLLLTISQAQAGWLQHDFGHLSVFKKSKWNHLIHKFIIG 205

  Fly   197 MMNFAA---WRVSHALSHHIYPNSY-FDLELSMFEPLLCWVPNP-HIKSKLMRYVSW-------- 248
            .:..|:   |...| ..||..||.: .|.:::|....:.....| ....|.::|:.:        
 Frog   206 HLKGASANWWNHRH-FQHHAKPNIFRKDPDVNMVNVFVLGDTQPVEFGKKRIKYLPYNHQHLYFF 269

  Fly   249 -VTEPVAYALAFFIQ----MGTRIFYSLRHTNILYWHDLLPLTIPIAIYLGTGGSLGIWICVR-- 306
             :..|:...:.|.||    |.||..:.....::.|:.......:|   :.|..|||.:...||  
 Frog   270 LIGPPLLIPIYFTIQIMKTMITRKDWVDLAWSVSYYARFFITFVP---FYGVLGSLALLNAVRFI 331

  Fly   307 --QWLAMTSIASFSFCLIGLNAAHHDPEIY-HEGDANREDRDWGLFQVDTIIDRGDLKWSQFLVL 368
              .|            .:.:...:|.|.:. ||     :.:||...|:....:.....::.:. .
 Frog   332 ESHW------------FVWVTQMNHLPMVIDHE-----KYKDWLETQLAATCNIEPSFFNDWF-S 378

  Fly   369 THFGDHVLHHLFPTL 383
            .|....:.||||||:
 Frog   379 GHLNFQIEHHLFPTM 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyt-b5-rNP_001260514.1 Cyt-b5 26..98 CDD:278597 20/70 (29%)
FA_desaturase 161..408 CDD:278890 49/252 (19%)
Membrane-FADS-like <328..385 CDD:294412 14/57 (25%)
fads2XP_012816067.1 PLN03199 1..434 CDD:178740 81/405 (20%)
Delta6-FADS-like 164..414 CDD:239583 49/252 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1060606at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.