DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhc and XIA

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_171954.1 Gene:XIA / 839480 AraportID:AT1G04600 Length:1730 Species:Arabidopsis thaliana


Alignment Length:1750 Identity:482/1750 - (27%)
Similarity:821/1750 - (46%) Gaps:312/1750 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKVEKVNP--PKFEK--IEDMADMTVLNT 99
            |:.|..:.::.||::....:.::|...|..|    ..|:..|.|  |:|.:  ::||..:..|:.
plant    14 WVEDPDDAWIDGEVEEVNSEEITVNCSGKTV----VAK
LNNVYPKDPEFPELGVDDMTKLAYLHE 74

  Fly   100 PCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYP-VYTNRCAKMYRGKRRNEVPPHIFAISDGAY 163
            |.||.||:.||.|..||||:|...:|:||:||.| :|.:...|.|:|....|:.||.||::|.||
plant    75 PGVLLNLKCRYNANEIYTYTGNILIAVNPFKRLPHLYGSETMKQYKGTAFGELSPHPFAVADSAY 139

  Fly   164 VDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKG-SLEDQVVQTNPVLE 227
            ..|:...|:|::|::|||||||||:||.::.|.|.:|.      .|:|:| |:|.||:::|||||
plant   140 RKMINEGVSQAILVSGESGAGKTESTKMLMQYLAYMGG------RAESEGRSVEQQVLESNPVLE 198

  Fly   228 AFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGS 292
            ||||||||||:||||||||:.|.|...|:::||.|.|||||::||......||:||.||.:.:..
plant   199 AFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAP 263

  Fly   293 VPGVKDICLLTDNIYDYHIVSQGK-VTVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVM 356
            ....:...|...:.:.|  ::|.. ..:..:||::|:..|.:|.|::|...:|::.::|:.||::
plant   264 EQETERYKLGKPSTFRY--LNQSNCYALDGLDDSKEYLATRKAMDVVGINSEEQDGIFRVVAAIL 326

  Fly   357 HMGGMKFKQRGREEQAEQDGEEEG----GRVSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQ 417
            |:|.::| .:|.|.:|.:..:|:.    ...::||.||...|..:|.|..:...:|.:|:..:..
plant   327 HLGNIEF-AKGEESEASEPKDEKSRFHLKVAAELFMCDGKALEDSLCKRVMVTRDESITKSLDPD 390

  Fly   418 QVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNE 482
            .......||.|.|:.:||.|||.|.|.::......:|.||||||.|||.|:.|.|||.|||.|||
plant   391 SAALGRDALAKIVYSKLFDWLVTKINNSIGQDPNSKHIIGVLDIYGFESFKTNSFEQFCINLTNE 455

  Fly   483 KLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIE-KPMGILSILEEESMFPKATDQT 546
            ||||.||.|:|.:|||||.:|.|||::|:| :|....:|||| ||.||:::|:|..|||::|..|
plant   456 KLQQHFNQHVFKMEQEEYTKEEIDWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPRSTHDT 519

  Fly   547 FSEKLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKK 611
            |::||..|...... |.|||..:     ..|.|.||||.|:|....:|:||||.:..........
plant   520 FAQKLYQTFKNHKR-FGKPKLAQ-----TDFTICHYAGDVTYQTELFLDKNKDYVVGEHQALLSS 578

  Fly   612 SQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIP 676
            |....:..:|.....:|           .|...|:::.|.:|:||.||:.:|.:|:||::||:.|
plant   579 SDCSFVSSLFPPLPEES-----------SKTSKFSSIGSQFKQQLQSLLESLSTTEPHYIRCVKP 632

  Fly   677 NEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKLLQGVEKDKKAT 741
            |.:.:|.:.:...::|||.|.||:|.|||...|:|.|..:.:|..|::|:.|:..:....:..|.
plant   633 NNLLKPDIFENINILHQLRCGGVMEAIRISCAGYPTRKPFNEFLTRFRILAPETTKSSYDEVDAC 697

  Fly   742 EIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWARGYLSRKGFKKLQEQ 806
            :.::..:||  ..:::|.||||.|||.:.:|:..|.|.||.....:|.....|.|||.|..||..
plant   698 KKLLAKVDL--KGFQIGKTKVFLRAGQMAEMDAHRAEVLGHSARIIQRNVLTYQSRKKFLLLQAA 760

  Fly   807 RVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKKAEELHAAEVKVRKE 871
            ...::.:.|.                       .|:|:..|..|.|          ||.::::|:
plant   761 STEIQALCRG-----------------------QVARVWFETMRRE----------AASLRIQKQ 792

  Fly   872 LEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKLTAQKNDLENQLRDIQERLT---QEEDAR- 932
            ......: .|.||....:.|.:.|           :.|:...:|.|||. :.|.|   |.:..| 
plant   793 ARTYICQ-NAYKTLCSSACSIQTG-----------MRAKAARIELQLRK-KRRATIIIQSQIRRC 844

  Fly   933 --NQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNKEK 995
              :|.:.:.|||              .:..|...:.|..: .::|||                  
plant   845 LCHQRYVRTKKA--------------AITTQCGWRVKVAR-RELRNL------------------ 876

  Fly   996 KMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKL 1060
            ||..   ::||.           |...|.|||..::||..:||.||::|.::|::|.:   :::.
plant   877 KMAA---KETGA-----------LQDAKTKLENQVEELTSNLELEKQMRMEIEEAKSQ---EIEA 924

  Fly  1061 TQEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQ----RQIKELQARIEELEEEV 1121
            .|..:.|:   |.:|..|.:.|.||:|.:.:.|.|.::.:...|    ::|.:||:.:::::.|:
plant   925 LQSVLTDI---KLQLRDTQETKSKEISDLQSVLTDIKLQLRDTQETKSKEISDLQSALQDMQLEI 986

  Fly  1122 EAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEANIQHES 1186
            |    ..:|..:...|||.|    .|:|:|:..:...:|:.::::..|:||    :.|..|:.|.
plant   987 E----ELSKGLEMTNDLAAE----NEQLKESVSSLQNKIDESERKYEEISK----ISEERIKDEV 1039

  Fly  1187 TLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQLNDLRAGVDHITNEKAAQEKIAKQL 1251
            .:                 :||...:|.:.|.:|         |:|              :...:
plant  1040 PV-----------------IDQSAIIKLETENQK---------LKA--------------LVSSM 1064

  Fly  1252 QHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKR 1316
            :..::|:..|.|||:..:.  :..|:.:|.: .:::..| |||::  :|..:..||..::.::..
plant  1065 EEKIDELDRKHDETSPNIT--EKLKEDVSFD-YEIVSNL-EAENE--RLKALVGSLEKKINESGN 1123

  Fly  1317 LADEESRERATLLGKFRNLEHD--LDNLREQVEEEAEGKADLQRQLSKANAEAQVWRSKYESDGV 1379
            .:.:|..|...:| |..:|..|  :||  |:|::.|:...||...:|....:......||     
plant  1124 NSTDEQEEGKYIL-KEESLTEDASIDN--ERVKKLADENKDLNDLVSSLEKKIDETEKKY----- 1180

  Fly  1380 ARSEELEEAKRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQL--EVDRANAIANAAE 1442
                  |||.|..:.||.:|.:....|    |.|:.:.|||..:|.|::.  ::.|..|:.|:|.
plant  1181 ------EEASRLCEERLKQALDAETGL----IDLKTSMQRLEEKVSDMETAEQIRRQQALVNSAS 1235

  Fly  1443 KKQKAFDKIIGEWKLKVDDLAAELDASQKE------CRNYSTELFRLKGAYEEGQEQLEAVRR-E 1500
            ::........|         |..|:...:|      .|.:.||.||......:..|.::.:.: .
plant  1236 RRMSPQVSFTG---------APPLENGHQEPLAPIPSRRFGTESFRRSRIERQPHEFVDVLLKCV 1291

  Fly  1501 NKNLADEVKDLLDQIGEG----GRNIHEIEKARKRLEAEKDEL--------QAALEEAEAALEQE 1553
            :||:.         ...|    ...|::.....|..||||..:        .:|:|.     :::
plant  1292 SKNIG---------FSHGKPVAALTIYKCLMRWKIFEAEKTSIFDRIVPVFGSAIEN-----QED 1342

  Fly  1554 ENKVLRAQLELSQVRQEIDRRIQEKEEEFENTRKNHQ------------RALDSMQASLEA--EA 1604
            :|.:.......|.:...:.|.::::.....:..|..|            |:..|...|.:.  :.
plant  1343 DNHLAYWLTNTSTLLFLLQRSLRQQSSTGSSPTKPPQPTSFFGRMTQGFRSTSSPNLSTDVVQQV 1407

  Fly  1605 KGKAEALRMKKKLEADINELEIALDHANKANAEAQKNIKRYQ--------QQLKDIQTALEEEQR 1661
            ..:..||..|::|.|.:..:...:          ::|:||..        |.||:..........
plant  1408 DARYPALLFKQQLTAYVETMYGII----------RENVKREVSSLLSSCIQSLKESSCDSSVVNS 1462

  Fly  1662 ARDDAREQLGISERRANALQNELEESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNAS 1721
            ....:.|.|.......|:.:...||:.......|:    :.|:|:|.:....|..|..:|
plant  1463 PSKSSEENLPAKSSEENSPKKSSEENSPKESSGDK----SPQKLSDDNSPSKEGQAVKSS 1518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 7/33 (21%)
MYSc 81..777 CDD:214580 271/707 (38%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 261/672 (39%)
Myosin_tail_1 842..1897 CDD:279860 187/934 (20%)
V_Alix_like 1557..1877 CDD:187408 29/186 (16%)
ATP-synt_B <1671..1771 CDD:304375 9/50 (18%)
TMPIT 1739..>1825 CDD:285135
XIANP_171954.1 Myosin_N 11..47 CDD:280832 7/36 (19%)
MYSc 59..727 CDD:214580 267/696 (38%)
MYSc_Myo11 75..719 CDD:276835 261/672 (39%)
SPEC 869..1036 CDD:295325 51/217 (24%)
TACC 974..1189 CDD:282818 60/286 (21%)
MyosinXI_CBD 1278..1699 CDD:271259 42/268 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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