DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhc and XI-I

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_001328260.1 Gene:XI-I / 829456 AraportID:AT4G33200 Length:1523 Species:Arabidopsis thaliana


Alignment Length:1617 Identity:450/1617 - (27%)
Similarity:732/1617 - (45%) Gaps:342/1617 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKVEKVNPPKFEK--IEDMADMTVLNTPC 101
            |:.|:...::..::..:..:.:.|....|:...:..||:.:.:|...|.  ::||..:|.|:...
plant    18 WVEDKDLAWIAADVLDSFDNKLHVETSTGKKVFVSPEKLFRRDPDDEEHNGVDDMTKLTYLHEAG 82

  Fly   102 VLHNLRQRYYAKLIYTYSGLFCVAINPYKRYP-VYTNRCAKMYRGKRRNEVPPHIFAISDGAYVD 165
            ||:||::||....||||:|...:|:||:|:.| :|.....:.|.|....|:.||:||:||.||..
plant    83 VLYNLQRRYALNDIYTYTGSILIAVNPFKKLPHLYNGHMMEQYMGAPFGELSPHVFAVSDVAYRA 147

  Fly   166 MLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQVVQTNPVLEAFG 230
            |:.:..:||:|::|||||||||.||.::.|...||.....|:.     |:|.||:::||:|||||
plant   148 MIDDSRSQSILVSGESGAGKTETTKLIMQYLTFVGGRATDDDR-----SVEQQVLESNPLLEAFG 207

  Fly   231 NAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPG 295
            ||||||||||||||||:.|.|...|:::||.|.|||||::||:.....||:||.|||:.:.....
plant   208 NAKTVRNDNSSRFGKFVEIQFDTNGRISGAAIRTYLLERSRVVRITDPERNYHCFYQLCASGNDA 272

  Fly   296 VKDICLLTDNIYDYHIVSQGKV-TVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVMHMG 359
            .|   ....|...:|.::|.|. .:..:..|||:..|.:|.||:|.::.|:|.::|..||::|:|
plant   273 EK---YKLSNPRQFHYLNQSKTYELEGVSSAEEYKNTRRAMDIVGISQDEQEGIFRTLAAILHLG 334

  Fly   360 GMKFKQRGREEQAEQDGEEEGGR----VSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQQVT 420
            .::|.. |||..:....:.|...    .:.||.||...|..:|....|......:.:..:.....
plant   335 NVEFSS-GREHDSSVVKDPESRHHLQMAADLFKCDANLLLASLCTRSILTREGIIIKALDPNAAV 398

  Fly   421 NSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQ 485
            .|...|.|.|:..||.|||.|.|:::....:.:..||||||.|||.|:.|.|||.||||.|||||
plant   399 TSRDTLAKTVYAHLFDWLVDKINKSVGQDPESRFQIGVLDIYGFECFKNNSFEQFCINFANEKLQ 463

  Fly   486 QFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIE-KPMGILSILEEESMFPKATDQTFSE 549
            |.||.|:|.:||:||::|.|:|::|:| :|....:|||| ||:|::::|:|..|||::|.::||.
plant   464 QHFNEHVFKMEQDEYRKEEINWSYIEF-IDNQDVLDLIEKKPIGVIALLDEACMFPRSTHESFSM 527

  Fly   550 KLTNTHLGKSAPFQK----PKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQ-- 608
            ||          ||.    |:..||......|.::||||.|:|....:|:||:|   .|:|:.  
plant   528 KL----------FQNFRFHPRLEKPKFSETDFTLSHYAGKVTYQTEAFLDKNRD---YTIVEHCN 579

  Fly   609 -FKKSQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVR 672
             ...|:...:..||.....:|          .:....|::|||.:|:||.:||.||..|:||:||
plant   580 LLSSSKCPFVAGIFPSAPEES----------TRSSYKFSSVSSRFKQQLQALMETLSKTEPHYVR 634

  Fly   673 CIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKLLQGVEKD 737
            |:.||.:.:|...::..|:|||.|.||||.:||...|:|.|..|.||..|:.::.|:.:.....:
plant   635 CVKPNSLNRPQKFESLSVLHQLRCGGVLEAVRISLAGYPTRRNYSDFVDRFGLLAPEFMDESNDE 699

  Fly   738 KKATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDE-----------RLGKIMSW----- 786
            :..||.|:..:.|  ..|:||.||||.|||.:|.::..|.|           ||...::.     
plant   700 QALTEKILSKLGL--GNYQLGRTKVFLRAGQIGILDSRRAEVLDASARLIQRRLRTFVTHQNFIS 762

  Fly   787 -------MQAWARGYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRI 844
                   :||:.||.|||..:...:....|: :||:::|::|.  ...:.||....  ::..|.|
plant   763 ARASAISIQAYCRGCLSRNAYATRRNAAAAV-LVQKHVRRWLS--RCAFVKLVSAA--IVLQSCI 822

  Fly   845 EDEIARLE---EKAKKAEELHAAEVKVRKELEAL--------------NAKLLAEKTALLDSLSG 892
            ..:..||:   :|..:|..|..|..::.|...|.              ..||...:...|..::.
plant   823 RADSTRLKFSHQKEHRAASLIQAHWRIHKFRSAFRHRQSSIIAIQCRWRQKLAKREFRKLKQVAN 887

  Fly   893 EKGALQDYQERNAKLTAQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLE 957
            |.|||:          ..|..||.:|.|::.||..|:..|....:.|   ..|||.|:|.:|...
plant   888 EAGALR----------LAKTKLEKRLEDLEWRLQLEKRLRTSGEEAK---SSEISKLQKTLESFS 939

  Fly   958 LNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNK----EKKMQGETNQKTGEELQAAEDKIN- 1017
            |.:..|.  .||                  ||:.||    ||::.....:|:     |.|.::| 
plant   940 LKLDAAR--LAT------------------INECNKNAVLEKQLDISMKEKS-----AVERELNG 979

  Fly  1018 --HLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKELEQTIQ 1080
              .|.|..|.|:.::    :|||::.:|   :||.....:.:...|.:.:.:.|:...||:.::|
plant   980 MVELKKDNALLKNSM----NSLEKKNRV---LEKELLNAKTNCNNTLQKLKEAEKRCSELQTSVQ 1037

  Fly  1081 RKDKELSSITAKLEDEQVVVL------------------KHQRQIKELQ-------------ARI 1114
            ..:::||    .||:|..|::                  ||...:...|             ..|
plant  1038 SLEEKLS----HLENENQVLMQKTLITSPERIGQILGEQKHSSAVVPAQNDRRSVFETPTPSKHI 1098

  Fly  1115 EELEEEVEAERQARAKAEKQRAD---LARELEE-LG----------------------------- 1146
            ......:...|:::..||:...:   |:|.::| ||                             
plant  1099 MPFSHSLSESRRSKLTAERNLENYELLSRCIKENLGFNDDKPLAACVIYKCLLHWRAFESESTAI 1163

  Fly  1147 -----ERLEEA--GGATSAQIEL-NKKREAELSKLRRDLEEANIQHESTLANLR---------KK 1194
                 |.:.||  ||..:..:.. .....|.|..|:|:|...:..:.|...:.|         |.
plant  1164 FNIIIEGINEALKGGDENGVLPYWLSNASALLCLLQRNLRSNSFLNASAQRSGRAAYGVKSPFKL 1228

  Fly  1195 H--NDAVAEMAEQVDQL---NKLKAKAEKEKNEYYGQLND-LRAGVDHITNE-----KAAQ---- 1244
            |  :|..:.:..:...|   .:|.|..||    .||.:.| |:..:..:...     ||::    
plant  1229 HGPDDGASHIEARYPALLFKQQLTACVEK----IYGLIRDNLKKELSPLLGSCIQAPKASRGIAG 1289

  Fly  1245 -----------------EKIAKQLQHTLNEVQSKLDETN------RTLNDFDASKKKLSIENSDL 1286
                             |.|.|    .|:.:.|:|.|.:      |.|.....|...||:.||.|
plant  1290 KSRSPGGVPQQSPSSQWESILK----FLDSLMSRLRENHVPSFFIRKLVTQVFSFINLSLFNSLL 1350

  Fly  1287 LRQL-------EEAESQVSQLSKIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLRE 1344
            ||:.       |..:|.:|:|.|...:...:...|.                    .|:|:.:|:
plant  1351 LRRECCTFSNGEYVKSGISELEKWIANAKEEFAGTS--------------------WHELNYIRQ 1395

  Fly  1345 QV------EEEAEGKADLQRQLSKANAEAQV-------WRSKYESDGVARSEELEEAKRKLQARL 1396
            .|      :::.:...::::.|.......|:       |..||.:..|  |.|:....|.|    
plant  1396 AVGFLVIHQKKKKSLDEIRQDLCPVLTIRQIYRISTMYWDDKYGTQSV--SSEVVSQMRVL---- 1454

  Fly  1397 AEAEETIESLNQKCIGLEKTKQRLSTEVEDLQL-----EVDRANAIANAAEKKQKAF 1448
                  ::..|||     :|......: :|:.:     ::|:|..:.:.:|.:...|
plant  1455 ------VDKDNQK-----QTSNSFLLD-DDMSIPFSAEDIDKAIPVLDPSEIEPPKF 1499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 4/33 (12%)
MYSc 81..777 CDD:214580 274/711 (39%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 264/678 (39%)
Myosin_tail_1 842..1897 CDD:279860 152/775 (20%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
XI-INP_001328260.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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