DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhc and XID

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_180882.2 Gene:XID / 817886 AraportID:AT2G33240 Length:1770 Species:Arabidopsis thaliana


Alignment Length:2051 Identity:535/2051 - (26%)
Similarity:892/2051 - (43%) Gaps:441/2051 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKVEKVNP--PKFEK--IEDMADMTVLNT 99
            |:.|..|.:|.||:....|..:.|..|...|    ..||..|:|  |:|.:  ::||..:..|:.
plant    31 WVEDPDEAWLDGEVVEANGQEIKVNCQTKTV----VAK
VNAVHPKDPEFPELGVDDMTKLAYLHE 91

  Fly   100 PCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYP-VYTNRCAKMYRGKRRNEVPPHIFAISDGAY 163
            |.||.||:.||.|..||||:|...:|:||:||.| :|.|...:.|:|....|:.||.||::|.||
plant    92 PGVLLNLKARYNANEIYTYTGNILIAVNPFKRLPHLYGNEIMEQYKGTDFGELSPHPFAVADSAY 156

  Fly   164 VDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKG-SLEDQVVQTNPVLE 227
            ..|:...|:|::|::|||||||||:||.::.|.|.:|..      |:|:| |:|.||:::|||||
plant   157 RKMINEGVSQAILVSGESGAGKTESTKMLMQYLAYMGGK------AESEGRSVEQQVLESNPVLE 215

  Fly   228 AFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGS 292
            ||||||||||:||||||||:.|.|...|:::||.|.|||||::||......||:||.||.:.:..
plant   216 AFGNAKTVRNNNSSRFGKFVEIQFNHMGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAP 280

  Fly   293 VPGVKDICLLTDNIYDYHIVSQGKV-TVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVM 356
            ....:...|...:  .:|.::|... .:.:|||::|:..|.:|.|::|.:.:|::.::|:.||::
plant   281 EQETERYQLGKPS--TFHYLNQSNCHALDAIDDSKEYLATRKAMDVVGISPEEQDAIFRVVAAIL 343

  Fly   357 HMGGMKFKQRGREEQAEQDGEEEGGRV---SKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQQ 418
            |:|.::|.:....:.||...::....:   :|||.||...|..:|....:....|.:|:..:...
plant   344 HLGNIEFAKSEESDGAEPKDDKSRFHLKVAAKLFMCDEKALENSLCNRVMVTRGESITKPLDPGS 408

  Fly   419 VTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEK 483
            ...|..||.|.|:.:||.|||.|.|.::......::.||||||.|||.|:.|.|||.|||.||||
plant   409 AALSRDALAKIVYSKLFDWLVTKINNSIGQDSSSKYIIGVLDIYGFESFKTNSFEQFCINLTNEK 473

  Fly   484 LQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIE-KPMGILSILEEESMFPKATDQTF 547
            |||.||.|:|.:|||||.:|.|||::|:| :|....:|||| ||.||:::|:|..|||::|..|.
plant   474 LQQHFNQHVFKMEQEEYTKEEIDWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPRSTHDTL 537

  Fly   548 SEKLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKS 612
            :|||..| .|....|.|||..:     ..|.|.||||.|:|....:|:|||    |.||.:.:..
plant   538 AEKLYQT-FGSHKRFTKPKLAR-----TDFTICHYAGDVTYQTELFLDKNK----DYVVGEHQSL 592

  Fly   613 QN----KLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRC 673
            .|    ..:..:|.....:|           .|...|:::.|.:|:||.||:.||.:|:||::||
plant   593 MNSSDCSFVSSLFPKSREES-----------SKSSKFSSIGSQFKQQLQSLLETLNTTEPHYIRC 646

  Fly   674 IIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKLLQGVEKDK 738
            :.||.:.:|.:.:...|:|||.|.||:|.|||...|:|.|..:.:|..|::|:.|:..:....:.
plant   647 VKPNNVLKPEIFENVNVLHQLRCGGVMEAIRISCAGYPTRKPFNEFLTRFRILAPEATERSFDEV 711

  Fly   739 KATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWARGYLSRKGFKKL 803
            .|.:.::..:||  ..:::|.||||.|||.:.:::..|.|.||.....:|.....|||||.:..|
plant   712 DACKKLLARVDL--KGFQIGKTKVFLRAGQMAELDAHRAEVLGHSARIIQRKVITYLSRKKYLLL 774

  Fly   804 QEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKKAEELHAAEVKV 868
            |.....::...|.                              .|||::.||.:.|   ||.|::
plant   775 QSASTEIQAFCRG------------------------------HIARVQFKATRRE---AASVRI 806

  Fly   869 RKELEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKLTAQKNDLENQLRDIQERLTQEEDARN 933
            :|:     |:....:||.                  .||.|....:::.||.:..|:.       
plant   807 QKQ-----ARTYICQTAF------------------KKLCASAISIQSGLRAMAARVE------- 841

  Fly   934 QLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNKEKKMQ 998
              ||.:.|....|. ::..|.......:.....||....|. ....::||::     |.|.|...
plant   842 --FQYRTKRKAAII-IQSQIRRCLCRRRYLRTKKAAITTQC-GWRVKVAHRE-----LRKLKMAA 897

  Fly   999 GETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDLKLTQE 1063
            .||..               |...|.|||:.::||...||.||::|.::|:.|.:...||:   .
plant   898 KETGA---------------LQDAKTKLEKEVEELTSCLELEKQMRMELEQVKTQEVEDLR---S 944

  Fly  1064 AVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEVEAERQAR 1128
            |:.|:   |.:|.:|...|.:|              :||.|..::::|...|||.:|:|......
plant   945 ALNDM---KLQLGETQVTKSEE--------------ILKLQSALQDMQLEFEELAKELEMTNDLA 992

  Fly  1129 AKAEKQR---ADLARELEELGERLEEAGGATSAQIEL----------------NKKREAELSKLR 1174
            |:.|:.:   :.|.|:::|...:.||....:..:::.                |:|.:|.:|.|.
plant   993 AENEQLKDLVSSLQRKIDESDSKYEETSKLSEERVKQEVPVIDQGVIIKLEAENQKLKALVSTLE 1057

  Fly  1175 RDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQL----NKLKAKAEKEKNEYYGQLNDLRAGVD 1235
            :.::..:.:|:.|.:|:..:..::.:...|.:..|    .:|||.....:||.|.  ||   |.|
plant  1058 KKIDSLDRKHDVTSSNISDQLKESASSDYEMLSNLAAENERLKALVSSLENENYE--ND---GND 1117

  Fly  1236 HITNEKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDF---DASKKKLSIENSDLLRQLEEAESQV 1297
            ....:|...:.:.:::                ...||   |....||:.||.||...::..|.::
plant  1118 SPNEQKEGPQMLKEEI----------------LAEDFSIDDEMTNKLAAENKDLYDLVDLLERKI 1166

  Fly  1298 SQLSKIKISLTTQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLSK 1362
            .:..|       :.|:..:|.:|                    .|::.|:.|             
plant  1167 DETEK-------KYEEASKLCEE--------------------RLKQVVDTE------------- 1191

  Fly  1363 ANAEAQVWRSKYESDGVARSEELEEAKRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDL 1427
                     .||           |||.|..:.||.:..:|    ..|.|.|:.:.|||..:|.|:
plant  1192 ---------KKY-----------EEASRLCEERLKQVVDT----ETKLIELKTSMQRLEEKVSDM 1232

  Fly  1428 QLE--VDRANAIANAAEKK---QKAFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAY 1487
            :.|  :.|..|:.|:|.:|   ||:.|..:..:..:..:.......:....|.:....||.....
plant  1233 EAEDKILRQQALRNSASRKMSPQKSLDLFVFMYLFQPVENGHHESFAPIPSRRFGAMSFRRSQIE 1297

  Fly  1488 EEGQEQLEAVRRENKNLADEVKDLLDQIG-EGGR-----NIHEIEKARKRLEAEKDEL------- 1539
            ::..|.::.:          :|.:...:| ..|:     .|::.....|..||||..:       
plant  1298 QQPHEFVDVL----------LKCVSKNVGFSHGKPVAAFTIYKCLIHWKLFEAEKTSVFDRIVPI 1352

  Fly  1540 -QAALEEAEAALEQEENKVLRAQLELSQVRQEIDRRIQEKEEEFENTRKNHQ------RALDSMQ 1597
             .:|:|..|     :::.:.......|.:...:.|.::.......:.:|..|      |.....:
plant  1353 FGSAIENPE-----DDSNLAYWLTNTSTLLFLLQRSLKSHSTTGASPKKPPQPTSFFGRMTQGFR 1412

  Fly  1598 ASLEAEAKG--------KAEALRMKKKLEADINELEIALDHANKANAEAQKNIKRYQ-------- 1646
            :...|...|        :..||..|::|.|.|..:          ....|:|:||..        
plant  1413 SPSSASLSGDVVQQVDARYPALLFKQQLTAYIETI----------YGIFQENVKRKLAPVLSSCI 1467

  Fly  1647 QQLKDIQTALEEEQRARDDAREQLGISERRANALQNELEES--RTLLEQADRGRRQAEQELA--- 1706
            |.|||         .:.:.:.|.|.......|:.:...||:  ..|.|....| :.:|..||   
plant  1468 QGLKD---------SSHEFSAETLSAESSEQNSPEKPSEENPPEKLSEDNSSG-KLSEDYLAAKP 1522

  Fly  1707 ------------DAHEQLNEVSAQ---NASISAAKRKLESELQTLHSDLDELLNEAKNSEEKAKK 1756
                        ::..:|:||:.|   :|..|.||...|:.......|:..|||:...:   .||
plant  1523 SEDNSPAKPSEENSQAKLSEVNPQAKPSAENSLAKPSEENSPTETWQDVIGLLNQLLGT---LKK 1584

  Fly  1757 AMVDAARLADELRAEQDHAQTQEKLRKALEQQI-----------KELQVRLDEAEA--------- 1801
            ..|..      ..|::...||.:.:...|...:           |::.|.|:|.|:         
plant  1585 NYVPL------FLAQKIFCQTFQDINVQLFNSLLQRECCTFIMGKKVNVWLNELESWCSQATEDF 1643

  Fly  1802 -----NALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNL---RKSERRVKELSFQSEEDRK 1858
                 :.||..::|:..|   |.|.::.:     .:.|...||   ..:::..:..:....:|.:
plant  1644 VGSSWDELKNTRQALVLL---VTEQKSTI-----TYDDLTTNLCPALSTQQLYRICTLCKIDDHE 1700

  Fly  1859 NHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLAKFRKAQQELEEAEERADLAEQAISKFRAKG 1923
            :.....|::..|:..:..   :.|::......|.:....|..|:..:.:..|.            
plant  1701 DQNVSPDVISNLKLLVTD---EDEDSRSFLLDNNSSIPFAADEISNSMQEKDF------------ 1750

  Fly  1924 RAGSVGRGASPAPRATSVRPQFDGLAFPPRFDLAPE 1959
                           |:|:|..: ||..|.|....|
plant  1751 ---------------TNVKPAVE-LADNPNFHFLKE 1770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 10/33 (30%)
MYSc 81..777 CDD:214580 274/710 (39%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 265/675 (39%)
Myosin_tail_1 842..1897 CDD:279860 224/1169 (19%)
V_Alix_like 1557..1877 CDD:187408 69/389 (18%)
ATP-synt_B <1671..1771 CDD:304375 25/119 (21%)
TMPIT 1739..>1825 CDD:285135 22/110 (20%)
XIDNP_180882.2 Myosin_N 28..64 CDD:280832 10/36 (28%)
MYSc 76..744 CDD:214580 271/699 (39%)
MYSc_Myo11 92..736 CDD:276835 265/675 (39%)
Tropomyosin_1 926..1068 CDD:289488 33/161 (20%)
PRKG1_interact 937..1023 CDD:292521 25/105 (24%)
MIS13 987..1241 CDD:285420 63/338 (19%)
MyosinXI_CBD 1298..1739 CDD:271259 85/495 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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