DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhc and XID

DIOPT Version :10

Sequence 1:NP_523587.4 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_180882.2 Gene:XID / 817886 AraportID:AT2G33240 Length:1770 Species:Arabidopsis thaliana


Alignment Length:13 Identity:5/13 - (38%)
Similarity:8/13 - (61%) Gaps:0/13 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 GLWGDRSQRYRFY 56
            |..||:.:.|:.|
plant   360 GWKGDKEKGYKHY 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_523587.4 Myosin_N 33..75 CDD:460670 5/13 (38%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874
Myosin_tail_1 842..1922 CDD:460256
XIDNP_180882.2 Myosin_N 25..68 CDD:460670
MYSc_Myo11 92..736 CDD:276835 5/13 (38%)
Mplasa_alph_rch 889..>1259 CDD:275316
MyosinXI_CBD 1298..1739 CDD:271259
Blue background indicates that the domain is not in the aligned region.

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