DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhc and XIF

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_001323600.1 Gene:XIF / 817748 AraportID:AT2G31900 Length:1557 Species:Arabidopsis thaliana


Alignment Length:1840 Identity:474/1840 - (25%)
Similarity:787/1840 - (42%) Gaps:482/1840 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WIPDEKEGYLLGEIKATKGDIVSVGLQGGE--VRDIKSEKVEKVNPPKFEKIEDMADMTVLNTPC 101
            |:.|.:..::.||:...||....:....|:  |..|.|...:....|. ..::||..:..|:.|.
plant    14 WVEDPELAWISGEVTEIKGTNAKIVTANGKTVVASISSIYPKDTEAPP-AGVDDMTKLAYLHEPG 77

  Fly   102 VLHNLRQRYYAKLIYTYSGLFCVAINPYKRYP-VYTNRCAKMYRGKRRNEVPPHIFAISDGAYVD 165
            |||||..|:....||||:|...:|:||::|.| :|:....:.|:|....|:.||:||::|.:|..
plant    78 VLHNLDCRFALNEIYTYTGNILIAVNPFQRLPHLYSVHMMEQYKGAAFGELSPHLFAVADTSYRA 142

  Fly   166 MLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQVVQTNPVLEAFG 230
            |:....:||:|::|||||||||.||.::.|.|.:|....|:..     |:|.||:::||||||||
plant   143 MINEARSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGR-----SVEQQVLESNPVLEAFG 202

  Fly   231 NAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPG 295
            |||||:|:||||||||:.|.|...||::||.|.|||||::||......||:||.||.:.:.....
plant   203 NAKTVKNNNSSRFGKFVEIQFDKRGKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEE 267

  Fly   296 VKDICLLTDNIYD---YHIVSQGK-VTVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVM 356
            .|..     .:.|   :|.::|.. ..|:::|||.|:..|..|.||:|..::.::.::|:.||::
plant   268 AKKF-----KVGDPRTFHYLNQTNCYEVSNVDDAREYLETRNAMDIVGIGQEAQDAIFRVVAAIL 327

  Fly   357 HMGGMKFKQRGREEQAEQDGEEEG----GRVSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQ 417
            |:|.:.| .:|.|..:.:..:::.    ...::|..|:...:..:|.|..|...:..:|:..:.:
plant   328 HLGNVNF-IKGEEADSSKLRDDKSRYHLQTAAELLMCNEKMMEDSLCKRVIVTPDGNITKPLDPE 391

  Fly   418 QVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNE 482
            ...::..||.|.|:.|||.|:|.|.|.::......:..||||||.|||.|:.|.|||||||.|||
plant   392 SAASNRDALAKTVYSRLFDWIVDKINSSIGQDPDAKSLIGVLDIYGFESFKINSFEQLCINLTNE 456

  Fly   483 KLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIE-KPMGILSILEEESMFPKATDQT 546
            ||||.||.|:|.:|||||.||.|:|::::| :|....:|||| ||.||:::|:|..||||:|.:|
plant   457 KLQQHFNQHVFKMEQEEYTREEINWSYVEF-VDNQDVLDLIEKKPGGIIALLDEACMFPKSTHET 520

  Fly   547 FSEKLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPL---NDTVVDQ 608
            |::|:..|:.|... |.|||..:..     |.:.||||.|:|:...:|:||||.:   :..::|.
plant   521 FAQKMYQTYKGHKR-FSKPKLAQTA-----FTVNHYAGDVTYSAEQFLDKNKDYVVAEHQALLDA 579

  Fly   609 FKKSQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRC 673
            .|.|....|.....:.|     .:|:|         |:::.:.:|:||.:||.||.:|:||::||
plant   580 SKCSFVANLFPPLPEDA-----SKQSK---------FSSIGTRFKQQLQALMETLNTTEPHYIRC 630

  Fly   674 IIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKLLQGVEKDK 738
            :.||.:.:||:.:...|::||.|.||||.|||...|:|.:..:.:|..|:.::...:.:|.: :|
plant   631 VKPNAVLKPGIFENDNVLNQLRCGGVLEAIRISCAGYPTKRAFDEFLDRFVMLATDVPEGSD-EK 694

  Fly   739 KATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWARGYLSRKGFKKL 803
            .|...|...:.|  ..|::|.||:|.|||.:.:::..|.|.|......:|...|.||:||.|  |
plant   695 SACASICNKMGL--KGYQIGKTKIFLRAGQMAELDARRTEVLAGATKLIQRQIRTYLTRKEF--L 755

  Fly   804 QEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKKAEELHAAEVKV 868
            .::|..:         |:|       |||:               |:|..|..:.....||.:.:
plant   756 GQKRATI---------YMQ-------KLWR---------------AKLARKLYQNMRREAASICI 789

  Fly   869 RKELEALNA-----KLLAEKTALLDSLSGEKGALQDYQERNAKLTAQKNDLENQLRDIQERLTQE 928
            :|.:.|..|     ||.|..|.:...|               :..:.:|...::.|.....:.|.
plant   790 QKNIRAHRARKNYTKLQASATVIQTGL---------------RTMSARNKHRHRRRTKAAIIIQR 839

  Fly   929 EDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNK 993
            |..|:|:.:..||                       ..|||                     |..
plant   840 EWRRHQVHEAYKK-----------------------HKKAT---------------------LAL 860

  Fly   994 EKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKVEGDL 1058
            :...:.:..:|..:.|:.|..:...|.:.|.|||:.::||...||.||..:.|:|.:|       
plant   861 QCLWRAKVARKELKNLRMAARETGALKEAKDKLEKRVEELTWRLELEKNQKADLEDAK------- 918

  Fly  1059 KLTQEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQARIEELEEEVEA 1123
              .|| :|.|:.|..||::              ||::....:::                     
plant   919 --AQE-IAKLQNNLTELQE--------------KLDEAYAAIIR--------------------- 945

  Fly  1124 ERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLEEANIQHESTL 1188
                    :|:.|.||  :|:....::|.....:.|:||                          
plant   946 --------DKEAAKLA--IEQAPPIIKEVPVVDNTQLEL-------------------------- 974

  Fly  1189 ANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQLNDLRAGVDHITNEKAAQEKIAKQLQH 1253
              |..::|:...|:|       |||.|.::.:.:.:...||.||.|   |..:.|:.| |.:.|.
plant   975 --LNSQNNELEVEVA-------KLKGKIKEFEVKCFALENDSRASV---TEAEDAKSK-AVEFQE 1026

  Fly  1254 TLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLSKIKISLTTQLEDTKRLA 1318
            .:..:.:.|              ..|..||..|.:|...|.:.|                     
plant  1027 IIERLHTNL--------------SNLESENQVLRQQALAASTSV--------------------- 1056

  Fly  1319 DEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLSKANAEAQVWRSKYESDGVARSE 1383
             ||..|..:|..|...||.:.:.||.|. |.||          |....|:|:.|:...:...:::
plant  1057 -EEIGELNSLKDKVAILESENETLRRQT-ESAE----------KTMPPARVFASEKNLENEHQTK 1109

  Fly  1384 ELEEAKR--------KLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLEVDRANAIANA 1440
            |::..|.        ..|..|.:.::....:..||:    |.:|          ..|...::|  
plant  1110 EIQATKEPRNPINVLAKQGSLTDRQQESHEVLMKCL----TDER----------RFDNEKSVA-- 1158

  Fly  1441 AEKKQKAFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEGQEQLEAVRRENKNLA 1505
                .....|.:.:|:|                                    .||   |..|:.
plant  1159 ----AWIVYKALLQWRL------------------------------------FEA---EKTNIF 1180

  Fly  1506 DEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVRQE 1570
            |.:             :|:|..:.::.:.:..||...|..:...|     .:|::.|:.|.....
plant  1181 DRI-------------VHKIRSSIEKGQDDTRELAYWLTTSSTLL-----YLLQSTLKFSNTNNA 1227

  Fly  1571 IDRRIQEKEEEFENTRKNHQ----RALDSMQAS---LEAEA---------------KGKAEALRM 1613
            ..||          .|.:|.    |.:..||.|   ||..:               :.|..||..
plant  1228 ASRR----------NRSSHATLFGRLVQGMQPSSVGLETSSGYSGMAGIPNDQQMVEAKYPALLF 1282

  Fly  1614 KK---------------KLEADINELEIALDHANKANAEAQKNIKRYQQQLKDIQTALEEEQRAR 1663
            |:               ||:.:||.|.....||.:...         .:.|:|:..::       
plant  1283 KQHLAAYVEKTYGMIRDKLKKEINPLLNLCIHAPRPTR---------AKTLRDVTKSI------- 1331

  Fly  1664 DDAREQLGISERRANALQ-----NELEESRTLLEQADRGRRQAEQELADA------HEQLNEVSA 1717
                ....|::::|:.:|     |:||.:.|.:         ||..:...      |:..:.::.
plant  1332 ----HLTTIAKQQASYVQWQNIVNKLEHTLTFM---------AENHVPSMITRKLFHQVFSYINV 1383

  Fly  1718 QNASISAAKRKL--ESELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLA-DELRAEQDHAQ--- 1776
            |..:....:|:.  .|..:.|...|.||       |:...||..:|.|.. |||:    |.:   
plant  1384 QLFNSLLLRRECCSVSNGEYLKMGLHEL-------EQWCLKADDEATRSPWDELQ----HIRQAV 1437

  Fly  1777 ----TQEKLRKALEQQIKEL 1792
                :.:|.:|:|::..||:
plant  1438 MFLVSHQKTQKSLDEIAKEI 1457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 8/35 (23%)
MYSc 81..777 CDD:214580 263/708 (37%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 256/677 (38%)
Myosin_tail_1 842..1897 CDD:279860 184/1022 (18%)
V_Alix_like 1557..1877 CDD:187408 57/294 (19%)
ATP-synt_B <1671..1771 CDD:304375 25/113 (22%)
TMPIT 1739..>1825 CDD:285135 17/62 (27%)
XIFNP_001323600.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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