DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhc and XIG

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_179619.2 Gene:XIG / 816548 AraportID:AT2G20290 Length:1493 Species:Arabidopsis thaliana


Alignment Length:1630 Identity:442/1630 - (27%)
Similarity:732/1630 - (44%) Gaps:303/1630 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 WIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKV---EKVNPPKFEKIEDMADMTVLNTP 100
            |:.|.:|.::.||:....|:.:.|....|:....|....   :...||  ..::||..:..|:.|
plant    24 WVQDPEEAWIDGEVVEVNGEDIKVQCTSGKTVVAK
GSNTYPKDMEVPP--SGVDDMTTLAYLHEP 86

  Fly   101 CVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYP-VYTNRCAKMYRGKRRNEVPPHIFAISDGAYV 164
            .||.||:.|||...||||:|...:|:||:|:.| :|.:.....|:|....|:.||.||::|.||.
plant    87 GVLQNLKSRYYIDEIYTYTGNILIAVNPFKQLPNLYNDHMMAQYKGAALGELSPHPFAVADAAYR 151

  Fly   165 DMLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQVVQTNPVLEAF 229
            .|:...::||:|::|||||||||..|.::.|.|.:|.     .|...:.::||||:::|||||||
plant   152 QMINEGISQSILVSGESGAGKTETAKMLMKYLAKMGG-----RAVSDRRTVEDQVLESNPVLEAF 211

  Fly   230 GNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVP 294
            ||||||:|:||||||||:.|.|...|:::||.|.|||||::||......||:||.|| ::..:.|
plant   212 GNAKTVKNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQVSDPERNYHCFY-MLCAAPP 275

  Fly   295 GVKDICLLTDNIYDYHIVSQGK-VTVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVMHM 358
            ..|....|.|.. ::..::|.. :.:..:||::|::.|.:|..|:|...:|:|.::|:.||::|:
plant   276 EDKRKLKLNDPT-EFRYLNQSHCIKLDGVDDSKEYTKTREAMGIVGINLEEQEAIFRVVAAILHL 339

  Fly   359 GGMKFKQRGREEQAEQDGEEEGGRV---SKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQQVT 420
            |.::| ..|.|..:....:|....:   ::||.||...|..:|.|..:....|.:::..:.....
plant   340 GNIEF-AIGEEPDSSVPTDESKKYLKIAAELFMCDEQALEDSLCKRIMVTPEETISRCLDPNSAA 403

  Fly   421 NSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQ 485
            .|..||.|.|:.|||.|:|.|.|.::......:..||||||.|||.|:.|.|||.|||.||||||
plant   404 LSRDALAKFVYSRLFDWIVNKINNSIGQDPDSKDMIGVLDIYGFESFKTNSFEQFCINLTNEKLQ 468

  Fly   486 QFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPM-GILSILEEESMFPKATDQTFSE 549
            |.|..|:..:|||||.:|.|:|:.|.| .|....::||||.. ||:::|:|..|||::|.:|||:
plant   469 QHFTQHVLKMEQEEYTKEEIEWSQITF-PDNRYVLELIEKKRGGIIALLDEACMFPRSTHKTFSQ 532

  Fly   550 KLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQN 614
            ||..| |..:..|.|||..:     ..|.|.||||.|:|....:||||||               
plant   533 KLYET-LKDNKYFSKPKLSR-----TDFTICHYAGDVTYQTEQFLEKNKD--------------- 576

  Fly   615 KLLIEIFADHAGQSGGG-------------EQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRST 666
                .:.|:|....|..             |.|     .|...|::::|.:|:||.||:..|.:|
plant   577 ----YVVAEHQALLGASRCTFIAGLFPPLVEDA-----NKQSKFSSIASQFKQQLASLIEGLNTT 632

  Fly   667 QPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKLL 731
            :||::||:.||.:.:|.:.:....:.||.|.||:|.||:||.|:|.|..:.:|..|:.|:....|
plant   633 EPHYIRCVKPNNLLKPSIFENQNSLQQLRCGGVMETIRVCRAGYPTRKHFDEFLDRFGILDSATL 697

  Fly   732 QGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQAWARGYLS 796
            .....:|.|.:.:::.:.|  :.:::|.||||.:||.:.::::.|.|.||:....:|...|.||:
plant   698 DKSSDEKAACKKLLETVGL--NGFQIGKTKVFLKAGQMAELDDRRTEVLGRAACIIQWKFRSYLT 760

  Fly   797 RKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKKAEEL 861
            |:.|..|:...:.::.|.|.                       .|:|...|..|.|         
plant   761 RQSFIMLRNAAINIQAVYRG-----------------------QVARYRFENLRRE--------- 793

  Fly   862 HAAEVKVRKELEALNAKLLAEKTALLDSLSGEKG-ALQDYQERNAKLTAQKNDLENQLRDIQERL 925
             ||.:|:::.|.....:..:...|::...||.:| |.:....|..|.|..   :::..|.::..|
plant   794 -AAALKIQRALRIHLDRKRSYIEAVVTVQSGLRGMAARVVLRRKTKATTV---IQSHCRRLRAEL 854

  Fly   926 TQEEDARNQLFQQK----KKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDE 986
            ..::..:..:..|.    :.|.:|:..||.|..|..: :|.|:...|.|             .:|
plant   855 HYKKLKKAAITTQSAWRARLARKELRKLKTDARDTVV-LQAAKSMLAEK-------------VEE 905

  Fly   987 LINKLNKEKKMQGETNQKTGEE---LQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVE 1048
            |..:|:.||:|:.:......:|   ||.|      |.:::.:.|:|...|...:|..||....|.
plant   906 LTWRLDLEKRMRVDMEVSKAQENAKLQLA------LEEIQLQFEETKVSLLKEVEAAKKTAAIVP 964

  Fly  1049 KSKRKVEGDLKLTQEAVADLERNKK---ELEQTIQRKDKELSSITAKLEDEQV-VVLKHQRQIKE 1109
            ..|.....|..|.::..::.|:.|.   .||..|...:|:... |.|:.:|:: ..|..:.:|..
plant   965 VVKEVPVVDTVLMEKLTSENEKLKSLVTSLELKIDETEKKFEE-TKKISEERLKKALDAENKIDN 1028

  Fly  1110 LQARIEELEE---EVEAERQ--------ARAKAEKQRADLARELEELGERLEEAGGATSAQIELN 1163
            |:..:..|||   ||:.|..        ...|....|. |:..|:.|     :.|..||.:.:|:
plant  1029 LKTAMHNLEEKLKEVKLENNFLKESVLTTPVKTASGRF-LSTPLKNL-----QNGLFTSEESQLS 1087

  Fly  1164 KKREAELSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQLN 1228
               .||.:...| ::|:....:|..:::..:|.|        ||.|                 :|
plant  1088 ---GAEFTTPPR-IQESGSDTKSRGSHIDPQHED--------VDAL-----------------IN 1123

  Fly  1229 DLRAGVDHITNEKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKL--SIENSD------ 1285
            .:...|.....:..|...|.|.|.|.      |..|..|| |.||...:.:  :|::.|      
plant  1124 SVTKNVGFSQGKPVAAFTIYKCLLHW------KSFEAERT-NVFDRLVQMIGSAIKDEDNDANLA 1181

  Fly  1286 -----------LLRQ-----------LEEAESQVSQLSK---------------------IKISL 1307
                       :|:|           |.::.|.|..::|                     .|..|
plant  1182 YWLSNTSTLLFMLQQSLKSGGTGATPLRQSPSLVRWMTKGFRSPAAEAIRPVDAKDPALHFKQQL 1246

  Fly  1308 TTQLEDTKRLA-DEESRERATLL---------------------GKFRNLEHDLDNLREQVEEEA 1350
            ...:|....:. |...:|..|:|                     ..::::...||.|...::|..
plant  1247 EAYVEKILGIIWDNLKKELNTVLALCIQAPKTFKGNALISITTANYWQDIIEGLDALLSTLKESF 1311

  Fly  1351 EGKADLQRQLSKANA--EAQVWRS---KYESDGVARSEELEEAKRKLQARLAEAEETIESLNQKC 1410
            .....:|:..|:|.:  ..||..|   :.::......|.|:....||:....|.:|  |......
plant  1312 VPPVLIQKIFSQAFSLINVQVCNSLVTRPDNCSFINGEYLKSGLEKLEKWCCETKE--EYAGSSW 1374

  Fly  1411 IGLEKTKQRLSTEVEDLQLEVDRANAIANAAEKKQKAFDKIIGEWKLKVDDLAAELDASQ--KEC 1473
            ..|:.|:|               |.......:|...::|:|       .:||...|...|  |.|
plant  1375 DELKHTRQ---------------AVGFLLIHKKYNISYDEI-------ANDLCPNLQIQQHFKLC 1417

  Fly  1474 RNYSTELFRLKGAYEEGQEQLEAV---------RRENKNLAD-EVKDLLDQIGEGGRNIHEIEKA 1528
            ..|..|::..|...::....:..|         :.::.|:.. .:.||...:.:  ::..:::.|
plant  1418 TLYKDEIYNTKSVSQDVIASMTGVMTDSSDFLLKEDSSNIISLSIDDLCSSMQD--KDFAQVKPA 1480

  Fly  1529 RKRLE 1533
            .:.||
plant  1481 EELLE 1485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 8/33 (24%)
MYSc 81..777 CDD:214580 263/714 (37%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 256/683 (37%)
Myosin_tail_1 842..1897 CDD:279860 156/805 (19%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
XIGNP_179619.2 Myosin_N 23..58 CDD:280832 8/33 (24%)
MYSc 73..740 CDD:214580 261/707 (37%)
MYSc_Myo11 86..729 CDD:276835 256/683 (37%)
DUF4200 922..1052 CDD:290574 33/136 (24%)
MyosinXI_CBD 1112..1463 CDD:271259 69/406 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - mtm946
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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