DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhc and myo1g

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:XP_005170126.1 Gene:myo1g / 571487 ZFINID:ZDB-GENE-060503-562 Length:1010 Species:Danio rerio


Alignment Length:998 Identity:308/998 - (30%)
Similarity:480/998 - (48%) Gaps:138/998 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 LHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDML 167
            :.||:.|:....|||:.|...|::|||:...:|.....:.|||:...|.|||::|::|.||..|.
Zfish    26 MENLKLRFEKSRIYTFIGEVVVSVNPYRHLDIYGKDVIEDYRGRELYENPPHLYAVADAAYKAMK 90

  Fly   168 TNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQVVQTNPVLEAFGNA 232
            ....:..::|:|||||||||.:|.::.|.|.:....:..|..    |:::.::::|.||||||||
Zfish    91 RRAKDTCIVISGESGAGKTEASKYIMQYIAAITNPSQRAEVE----SVKNVLLKSNCVLEAFGNA 151

  Fly   233 KTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPGVK 297
            ||.||||||||||::.|:|...|...|..|..|||||:||:.||..||::|.|||::.|....:.
Zfish   152 KTNRNDNSSRFGKYMDINFNFNGDPTGGHINNYLLEKSRVVQQQEGERNFHSFYQLLRGGSDDLL 216

  Fly   298 DICLLTDNIYDYHIVSQG-KVTVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVMHMGGM 361
            ....|..:..:|...||| .||:||.:|::.......|..::|||.:|...:|:..:.::|:|.:
Zfish   217 KSLYLQRDPAEYTYTSQGASVTLASNNDSQCHKAVMAALKVIGFTAEEISSIYKTLSTILHLGNL 281

  Fly   362 KFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKV-GNEFVTQGRNVQQVTNSIGA 425
            :|...|  |.....||:....:|:|...:.....|.||...:.. |.|.:.:|.:.|:.:....|
Zfish   282 QFTSDG--EHVVLVGEDMLKNISELTSTEPENTRKALLYRTVATGGGEVIEKGHSEQEASYGRDA 344

  Fly   426 LCKGVFDRLFKWLVKKCNETLDTQ------QKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKL 484
            ..|.:::|||.|:|.:.|..::.:      ..:...||||||.|||||:.|.|||.|||:.||||
Zfish   345 FAKALYERLFAWIVGRINGVIEVKDYNPALHGKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKL 409

  Fly   485 QQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKP-MGILSILEEESMFP-KATDQTF 547
            ||.|...:...|||||:||||.|..|::..:.: .:||:|:| .||:|:|:|..:.. |.||...
Zfish   410 QQLFIELILRQEQEEYQREGITWQHIEYFNNQI-IVDLVEQPHKGIISVLDEACLIAGKVTDTVC 473

  Fly   548 SEKLTNTHLGKSAPFQKPK---PPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQF 609
            .:.: |..||:...:...|   ..|..:....|.|.||||.|:|::.|:|:||||||    ...|
Zfish   474 LDSM-NKKLGQHPHYTSRKLCPADKTMEFNRDFRIRHYAGDVTYSVDGFLDKNKDPL----FQDF 533

  Fly   610 KK----SQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHF 670
            |:    |.:.:|.|::.|  |:....|..|..        .|.::.:|..:.:|:..|...:|::
Zfish   534 KRLMYNSSDPVLKEMWPD--GKMSITEVTKRP--------LTAATLFKNSIIALVDKLACKEPYY 588

  Fly   671 VRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMC----PKLL 731
            ||||.|||:|.|.:.|.....||:...|:||.:|:.|.||..|..|..|..|||:.|    |..|
Zfish   589 VRCIKPNEVKSPLLFDDGRCQHQVAYLGLLENVRVRRAGFAYRQPYARFLQRYKMTCEYTWPNHL 653

  Fly   732 QGVEKDKKATEIIIK---FIDLPEDQYRLGNTKVFFRA-GVLGQMEEFRDERLGKIMSWMQAWAR 792
              :..|::|.|.|:.   |    ||....|..|:|.|. ..|..:|:.|...:..::.::|...|
Zfish   654 --MSTDQEAVEAIVNQHGF----EDDVAYGLNKIFVRTPRTLFTLEQERAALIPILVLFLQKVWR 712

  Fly   793 GYLSRKGFKKLQ---------------------EQRVALKVVQRNLRKYLQLRTWPWYKLWQKVK 836
            |.|:|...:|::                     |:|.|   ..||:..|.:...||       ..
Zfish   713 GALARMRCRKIRAIYTIMGYYKCYKVKAHFWEVERRFA---SVRNMADYGKSVEWP-------TP 767

  Fly   837 P--LLNVSRIEDEIAR---LEEKAKKAEELHAAEVKVRKELEALNAKLLAEKTALLDSLSGEK-- 894
            |  |....||...:.|   ..:..|.......|||:.              |.|...:||||:  
Zfish   768 PAALAQFHRITQHLYRRWWARQLIKNIPPSDMAEVRA--------------KVAAFSALSGERMD 818

  Fly   895 -GALQDYQERNAKLTAQKNDL--ENQLRDIQERLTQEEDARNQLFQQ--------KKKADQEISG 948
             |..:.: ||:....|:.:.|  .|.:| |.:.|..::.....||..        ....|:.:..
Zfish   819 WGYSRSW-ERDYLANAKDSPLMSSNFVR-ITKELKNKDQYGQVLFSSAVRMLNWFNNTKDRALLI 881

  Fly   949 LKKDIEDLE----LNVQKAEQDKATKDHQIRNLNDEI-----AHQDELINKLNKEKKMQGETN-- 1002
            ..|.|..||    ..|||.....:.....:.:.:|::     |.||:.:..|.:     |:.|  
Zfish   882 TDKHIYRLEPKKHFKVQKRIALDSVVGLSVTSGSDQLVVLHTATQDDFLVHLQR-----GQLNPN 941

  Fly  1003 -QKTGEELQAAEDKINHLNKVKA 1024
             .:.||.:.|..|   |..:||:
Zfish   942 QDRVGELVGAITD---HFTRVKS 961

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832
MYSc 81..777 CDD:214580 245/698 (35%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 242/685 (35%)
Myosin_tail_1 842..1897 CDD:279860 46/211 (22%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
myo1gXP_005170126.1 MYSc 8..696 CDD:214580 245/697 (35%)
MYSc_Myo1 23..684 CDD:276829 242/685 (35%)
Myosin_TH1 805..1002 CDD:283635 39/167 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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