DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhc and Myo61F

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_476934.2 Gene:Myo61F / 38153 FlyBaseID:FBgn0010246 Length:1052 Species:Drosophila melanogaster


Alignment Length:1061 Identity:323/1061 - (30%)
Similarity:508/1061 - (47%) Gaps:190/1061 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 NLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNEVPPHIFAISDGAYVDMLTN 169
            ||::|:...|||||.|...:::||||:.|:||:...|.||.|...|:||||||::|.|:..::..
  Fly    57 NLKKRFQEDLIYTYIGQVLISVNPYKQLPIYTDDHVKAYRNKHFYEMPPHIFAVTDNAFRSLIEE 121

  Fly   170 HVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKGSLEDQVVQTNPVLEAFGNAKT 234
            :..|.:||:||||:||||.:|||:.:.|....::.|.|..|      |:::::||||||||||||
  Fly   122 NRGQCVLISGESGSGKTEASKKVLQFIAACSGNQTTVEGVK------DKLLKSNPVLEAFGNAKT 180

  Fly   235 VRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSLERSYHIFYQIMSGSVPGVKDI 299
            .||||||||||::.|.|...|...|.:|..|||||:||::|...||::|||||:::|:...:...
  Fly   181 NRNDNSSRFGKYMDIQFDFKGAPIGGNILNYLLEKSRVVAQMGGERNFHIFYQLLAGADEALLQE 245

  Fly   300 CLLTDNIYDYHIVSQG-KVTVASIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVMHMGGMKF 363
            ..|...:..|..::.| ..||..|:||:.|....||..::.|||:|:.:::.|.|:::|:|.:.|
  Fly   246 LRLERALDTYSYLTDGLNGTVTRINDADSFKQVQQALTVIDFTKEEQREIFGIVASILHLGNVGF 310

  Fly   364 KQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQQVTNSIGALCK 428
            .:  .|..|:.:..:.....::|.|.:.:||...|....|....:.||...|.:....:..||.|
  Fly   311 TE--VEGNAKVNSRDLVVTAARLLGVNASELEAALTHRTIDARGDVVTSPLNQELAIYARDALAK 373

  Fly   429 GVFDRLFKWLVKKCNETL---DTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQQFFNH 490
            .|:||||.|||::.|.:|   :|:..|.:.:|:|||.|||||:.|.|||.||||.||||||.|..
  Fly   374 AVYDRLFSWLVQRLNISLQAKETRASRNNVMGILDIYGFEIFQKNSFEQFCINFCNEKLQQLFIE 438

  Fly   491 HMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPMGILSILEEESMFP-KATDQTFSEKLTN- 553
            .....||:||:||||:|..:::..:.:.|..:.||..||:|||:||.:.| :.||:||.||||. 
  Fly   439 LTLKSEQDEYRREGIEWIPVEYFDNKVICNLIEEKHKGIISILDEECLRPGEPTDKTFLEKLTQK 503

  Fly   554 --THLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKL 616
              .|.......:.|...|.......|.:.||||.|:|::.|:|:||.|.|...:.:...|:.|.:
  Fly   504 LAQHHHYVCHEKAPAHIKKIMLRDEFRLVHYAGEVTYSVNGFLDKNNDLLFRDLKETLSKAGNGI 568

  Fly   617 LIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQ 681
            :...|.:           |..|..|..  .|..:.::..||:||..|...:|.::|||.||:::.
  Fly   569 VRNCFPE-----------KELRSLKRP--ETAITQFRASLNNLMDILMCKEPSYIRCIKPNDLQT 620

  Fly   682 PGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKL---LQGVEKDKKATEI 743
            ..|.:..||:||:...|::|.:|:.|.||..|..|..|..|||.:....   .:|....|...:.
  Fly   621 ANVFNDELVLHQVKYLGLMENLRVRRAGFAYRRTYELFLERYKSLSKSTWPNYKGPGGPKAGVQQ 685

  Fly   744 IIKFIDLPEDQYRLGNTKVFFR-AGVLGQMEEFRDERLGKIMSWMQAWARGYLSRKGFKKLQEQR 807
            ::|.:...|::||:|.||:|.| ...|...|:...|:..:|.:.:||..:|.:.|:.:.||:.|.
  Fly   686 LVKDLGWDEEKYRVGETKLFIRWPRTLFDTEDAYQEKKHEIAAIIQAHWKGLMQRRKYLKLRAQV 750

  Fly   808 VALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKAKKAEELHAAEVKVRKEL 872
            :   ::|...|:.|                             .::.|||..|  ||: |:|   
  Fly   751 I---IMQSYCRRKL-----------------------------AQQAAKKRRE--AAD-KIR--- 777

  Fly   873 EALNAKLLAEKTALLDSLSGEKGALQDYQER---NAK---LTAQKNDLENQLRD----------- 920
                        |.:........|...:.|.   |||   |.....:|..::.|           
  Fly   778 ------------AFIKGFITRNDAPNGFNEEFIANAKRMWLLRLAKELPTKVLDKSWPHAPGHCE 830

  Fly   921 ----IQERLTQEEDAR----------NQLFQQKKKADQEISGLKKDIEDLELNVQK-AEQDKATK 970
                |..||.:...||          .:.|:.|..|::...|.|.:...   :|.. .::|:..|
  Fly   831 EASGILHRLHRLHLARIYRLKLTPQQKRQFELKVLAEKVFKGKKNNYAS---SVSTWFQEDRIPK 892

  Fly   971 DHQIRNLNDEIA-----------------------HQDELINKLNKE-KKMQGETNQKTGEELQA 1011
            :| |:.:||.:|                       .:|..|...||. ..:.|:|          
  Fly   893 EH-IQRVNDFVASTFGSEQLKYQSFCTKFDRHGYKSRDRFILLSNKAIYVLDGKT---------- 946

  Fly  1012 AEDKINHLNKVKAKLEQTLDELEDSLEREK------KVRGDVEKSKRKVEGDLKL---------- 1060
                      .|.|....||:::.:|....      ::..|::|.|    |||.|          
  Fly   947 ----------YKQKHRLPLDKIDFTLTNHNDDLMVIRIPLDLKKDK----GDLILIIPRIIEFST 997

  Fly  1061 -------TQEAVADLERNKKE 1074
                   |...|:.::||..|
  Fly   998 YIIDTVGTASIVSIVDRNSLE 1018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832
MYSc 81..777 CDD:214580 253/683 (37%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 250/670 (37%)
Myosin_tail_1 842..1897 CDD:279860 58/312 (19%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
Myo61FNP_476934.2 MYSc 32..720 CDD:214580 253/683 (37%)
MYSc_Myo1 52..707 CDD:276829 250/670 (37%)
Myosin_TH1 863..1035 CDD:283635 35/184 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466283
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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