DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhc and spe-15

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_490856.1 Gene:spe-15 / 171712 WormBaseID:WBGene00004969 Length:1219 Species:Caenorhabditis elegans


Alignment Length:1384 Identity:370/1384 - (26%)
Similarity:589/1384 - (42%) Gaps:376/1384 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 DSKKSCWIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKV-EKVN------------PPK 84
            |..:..||.||.||::...|.    ||...|.      .:.:||. |.||            |.|
 Worm    10 DFGRLVWISDEAEGFVAARIT----DIAENGF------TLATEKTSETVNRRYEDTWACEEDPQK 64

  Fly    85 FEKIEDMADMTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYP-VYTNRCAKMYRGKRR 148
              .:||...:..||...:|:|.|.||....||||.....::||||:... :|:....|.||||..
 Worm    65 --SVEDNCALVHLNEATLLNNCRLRYANGKIYTYVANILISINPYQLIDGLYSPETIKEYRGKSL 127

  Fly   149 NEVPPHIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATVGASKKTDEAAKSKG 213
            .::.||||||:|.||.:|.....:||::::|||||||||:.|.|:.|..        :......|
 Worm   128 GQMEPHIFAIADKAYREMRRIKTSQSIIVSGESGAGKTESQKAVLKYLC--------ENWGTDAG 184

  Fly   214 SLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQSL 278
            .::.::::|||:|||||||||:||:||||||||::|||...|.:||..:..||||.:||..|.:.
 Worm   185 PIQQRLLETNPILEAFGNAKTLRNNNSSRFGKFVQIHFSDNGTVAGGFVSHYLLETSRVCRQAAG 249

  Fly   279 ERSYHIFYQIMSGSVPGV-KDICLLTDNIYDY----------------------HIVSQGKVTVA 320
            ||:||||||:::||.|.: |.:.|...:.::|                      ...:...|:.:
 Worm   250 ERNYHIFYQLIAGSSPDLYKKLRLAPASSFNYLKHGATLFFVNSKSSLKTDASRFSETNSSVSDS 314

  Fly   321 SIDDAEEFSLTDQAFDILGFTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGG---- 381
            .|.|.::|:..::|..:.|.:..||..::...|.::|:|.::|     ||.|   .:..||    
 Worm   315 IISDIDDFAKLERALALSGVSDDEKMFIWSTVAGILHLGNIEF-----EENA---SDSRGGCMIT 371

  Fly   382 --------RVSKLFGCDTAELYKNLLKPRIKVGNEFVTQGRNVQ------QVTNSIGALCKGVFD 432
                    ..::|.|.:..|: |..|..||....:...:|..::      :.:....||.|.::.
 Worm   372 SGTENSLMAAAELLGLEPEEM-KLGLCARIMQTTKGGVKGTLIRVPLKAHEASAGRDALAKAIYS 435

  Fly   433 RLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNGFEQLCINFTNEKLQQFFNHHMFVLEQ 497
            :||.|||.:.|:::.. :|...:|||||:||||.|..|.|||.||||.|||||.|||..:...||
 Worm   436 KLFDWLVAQINKSIPF-EKSTGYIGVLDVAGFEYFAVNSFEQFCINFCNEKLQHFFNERILKQEQ 499

  Fly   498 EEYKREGIDWAFIDFGMDLLACIDLIE-KPMGILSILEEESMFPKATDQTFSEKL---TNTHLGK 558
            |.|:.||::...|:| .|.|.||:|.| |..|:..:|:||:..|:||.|.|:::.   ...|...
 Worm   500 EMYEAEGLNIQKIEF-TDNLDCIELFEKKASGLFDLLDEEAKLPRATFQHFTQRAHESNKNHFRL 563

  Fly   559 SAPFQ-KPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFA 622
            .||.: |.|..:..:......|.||||.|.|....::|||.|.|::::....::|...|::.:|.
 Worm   564 DAPRKSKVKSHREMRDDEGLLIRHYAGTVCYETRYFVEKNNDQLHNSLEMLIEQSSFPLVVSLFT 628

  Fly   623 DHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDA 687
            ..|    .|....|||.|.    .:|.:.:|.||:||:..|.:|..|||||:.||...:....|.
 Worm   629 SEA----TGAVKTGGRLKA----VSVGAKFKSQLSSLLDKLNNTGTHFVRCVKPNSQMKAWHFDG 685

  Fly   688 HLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCPKLLQGVEKDKKATEIIIKFIDLPE 752
            ..::.||.|.|:...:|:.::|||:|..:.|....|:...|..|..:: .:..::.:...:.|.:
 Worm   686 SAILGQLQCAGMASVLRLMQEGFPSRTSFADLYAMYEKNLPPSLARLD-PRLFSKCLFHALGLDQ 749

  Fly   753 DQYRLGNTKVFFRAGVLGQMEEFRD-------ERLGKIMSWM----------------------- 787
            :.::.|||||||.||...:.::...       |.:.|:..|:                       
 Worm   750 NDFQFGNTKVFFTAGKFAEFDQMMKQDPETVMELISKVTDWLVKARWRKVQYGAWSVIKLKNKIL 814

  Fly   788 ---------QAWARGYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSR 843
                     |||.||||.||.|.|    |:|                     :::|...||..||
 Worm   815 YRAEKIKKIQAWIRGYLVRKRFHK----RLA---------------------IFRKACALLENSR 854

  Fly   844 -IEDEIARLEEKAKKAEELHAAEVKVRKELEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKL 907
             :.|.:||:.|.::.            |..||            .||.:||              
 Worm   855 EMTDILARMNESSQD------------KWREA------------ADSTTGE-------------- 881

  Fly   908 TAQKNDLENQLRDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDH 972
                                              .|:.:..:|.|    :||   .|.|:|.|.:
 Worm   882 ----------------------------------LDELVKTIKND----DLN---TEIDRAVKCY 905

  Fly   973 QIRNLNDEIAHQDELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSL 1037
                                                                         ||.:
 Worm   906 -------------------------------------------------------------EDCV 909

  Fly  1038 EREKKVRGDVEKSKRKVEGDLKLTQEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLK 1102
            :|...:..|::         |:|..:.:|::||.:||.|      |||......|...||..:|:
 Worm   910 KRVDSIIADLK---------LQLENDELAEVERARKEAE------DKERREAEEKAAAEQEKILR 959

  Fly  1103 HQRQIKELQARIEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKRE 1167
            .:.:           ||..:|:::...:.|.|:..||.|.||                |:.::.:
 Worm   960 RKME-----------EEREKAQKEYELQLEMQKQKLAAEAEE----------------EVKRRNK 997

  Fly  1168 AELSKLRRDLEEANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEY------YGQ 1226
            .|     ||..:|.:  .|.||:     :|.||.:|::.      .|...|::::|      |..
 Worm   998 EE-----RDRLDAAV--SSRLAS-----SDGVALVAQEA------SAAPPKQQSKYDLGNWKYAD 1044

  Fly  1227 LNDLRAGVDHITNEKAAQEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLE 1291
            |.|.....:.:....|.:|:..::|: ..||.:|| :..||   |...::..|::.|........
 Worm  1045 LRDAINTSNDMELLVACKEEFHRRLR-IYNEWKSK-NSANR---DVPPTRAPLTVYNQQKPSSSS 1104

  Fly  1292 EAESQVSQLSKIKISLTTQ 1310
            ...|:|.....:..:||.|
 Worm  1105 MMVSRVQAAPHLNPALTQQ 1123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 10/36 (28%)
MYSc 81..777 CDD:214580 250/754 (33%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 240/711 (34%)
Myosin_tail_1 842..1897 CDD:279860 86/476 (18%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
spe-15NP_490856.1 Myosin_N 12..49 CDD:367160 13/46 (28%)
MYSc_Myo6 78..761 CDD:276833 239/710 (34%)
IQ <820..837 CDD:197470 9/16 (56%)
MAP7 <929..>1000 CDD:368554 25/108 (23%)
Myosin-VI_CBD 1123..1211 CDD:374599 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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