DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhc and LOC100537594

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:XP_021325145.1 Gene:LOC100537594 / 100537594 -ID:- Length:1085 Species:Danio rerio


Alignment Length:1071 Identity:602/1071 - (56%)
Similarity:785/1071 - (73%) Gaps:16/1071 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 EQRRID-QSKPYDSKKSCWIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKVEKVNPPKF 85
            |:.||: |:.|:|:|.:.::.|..|.||.|.:.:.:|...:|....|:...:|.::|..:|||||
Zfish    20 ERERIEAQNTPFDAKSAYFVIDADEMYLKGTLTSREGGKATVKTHSGKTVTVKEDEVFPMNPPKF 84

  Fly    86 EKIEDMADMTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRRNE 150
            :||||||.||.||.|.||:||::||.|.:||||||||||.:||||..|||.......||||:|.|
Zfish    85 DKIEDMAMMTHLNEPSVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYDAVVVAGYRGKKRIE 149

  Fly   151 VPPHIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATV----GASKKTDEAAKS 211
            .|||||:|||.||..|||:..|||:|||||||||||.|||:||.|||||    ||.|:...|.|.
Zfish   150 APPHIFSISDNAYQFMLTDRENQSVLITGESGAGKTVNTKRVIQYFATVGAMSGAKKQEPVAGKM 214

  Fly   212 KGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQ 276
            :||||||::..||:|||:|||||||||||||||||||||||.|||||.||||||||||:||..|.
Zfish   215 QGSLEDQIIAANPLLEAYGNAKTVRNDNSSRFGKFIRIHFGSTGKLASADIETYLLEKSRVTFQL 279

  Fly   277 SLERSYHIFYQIMSGSVPGVKDICLLTDNIYDYHIVSQGKVTVASIDDAEEFSLTDQAFDILGFT 341
            |.|||||||||:|:|..|.:.:..|:|.|.|||.::|||::||.||:|.|||..||.|.||||||
Zfish   280 SAERSYHIFYQLMTGHKPELLEALLITTNPYDYPMISQGEITVKSINDVEEFIATDTAIDILGFT 344

  Fly   342 KQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRIKVG 406
            ..||..:|::|.||||.|.|||||:.||||||.||.|...:::.|.|.::|::.|.|..||:|||
Zfish   345 ADEKIAIYKLTGAVMHHGSMKFKQKQREEQAEPDGTEVADKIAYLMGLNSADMLKALCYPRVKVG 409

  Fly   407 NEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFEYNG 471
            ||.||:|:.|.||.|::.||||.|::::|.|:|.:.||.|||:|.||.|||||||||||||:||.
Zfish   410 NEMVTKGQTVPQVNNAVSALCKSVYEKMFLWMVIRINEMLDTKQPRQFFIGVLDIAGFEIFDYNS 474

  Fly   472 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPMGILSILEEE 536
            .|||||||||||||||||||||||||||||:|||:|.||||||||.|||:||||||||.||||||
Zfish   475 LEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEE 539

  Fly   537 SMFPKATDQTFSEKLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKNKDPL 601
            .|||||||.:|..||.:.||||.:.||||||.| |:..|||::.||||.|.|||.|||:||||||
Zfish   540 CMFPKATDTSFKNKLHDQHLGKCSAFQKPKPAK-GKAEAHFSLVHYAGTVDYNIVGWLDKNKDPL 603

  Fly   602 NDTVVDQFKKSQNKLLIEIFADHA---GQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTTL 663
            ||:||..::||..|||..::|.||   .:.|||:  |||: ||||.|.|||:.::|.|..|||.|
Zfish   604 NDSVVQLYQKSSVKLLSFLYASHAAAEAEGGGGK--KGGK-KKGGSFQTVSALFRENLGKLMTNL 665

  Fly   664 RSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMCP 728
            |||.||||||:||||.|.||:::..||:|||.||||||||||||||||:|::|.|||.|||::..
Zfish   666 RSTHPHFVRCLIPNESKTPGLMENFLVIHQLRCNGVLEGIRICRKGFPSRILYGDFKQRYKVLNA 730

  Fly   729 KLL---QGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQAW 790
            .::   |.:: :|||:|.::..||:...||:.|:|||||:||:||.:||.|||:|..:::..||.
Zfish   731 SVIPEGQFID-NKKASEKLLGSIDVDHTQYKFGHTKVFFKAGLLGTLEEMRDEKLATLVTMTQAL 794

  Fly   791 ARGYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEKA 855
            .||::.||.|.|:.|:|.|:..:|.|:|.::.::.|||.||:.|:||||..:..|.|:|.::|..
Zfish   795 CRGFVMRKEFVKMMERREAIYSIQYNIRSFMNVKHWPWMKLYFKIKPLLKSAETEKEMAAMKENF 859

  Fly   856 KKAEELHAAEVKVRKELEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKLTAQKNDLENQLRD 920
            :|.:|.....:..:||||.....||.||..|...::.|...|.|.:||...|...|..||.:|::
Zfish   860 EKMKEDLTKALAKKKELEEKMVSLLQEKNDLQLQVASESENLSDAEERCEGLIKSKIQLEAKLKE 924

  Fly   921 IQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQD 985
            ..|||..||:...:|..:|:|.:.|.|.|||||:||||.:.|.|::|...:::::||.:|:|.||
Zfish   925 TTERLEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMASQD 989

  Fly   986 ELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVEKS 1050
            |.|.||.||||...|.:|:|.::|||.|||:|.|.|.|:||||.:|:||.|||:|||:|.|:|::
Zfish   990 ESIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKSKSKLEQQVDDLEGSLEQEKKLRMDLERA 1054

  Fly  1051 KRKVEGDLKLTQEAVADLERNKKELEQTIQR 1081
            |||:||||||.||::.|||.:|::.|:.|::
Zfish  1055 KRKLEGDLKLAQESIMDLENDKQQSEEKIKK 1085

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 8/36 (22%)
MYSc 81..777 CDD:214580 450/705 (64%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 428/674 (64%)
Myosin_tail_1 842..1897 CDD:279860 107/240 (45%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
LOC100537594XP_021325145.1 Myosin_N 34..72 CDD:308391 9/37 (24%)
MYSc_class_II 99..769 CDD:276951 428/674 (64%)
SMC_N 849..>1081 CDD:330553 105/231 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41153at33208
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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