DRSC - DRSC Integrative Ortholog Prediction Tool

DRSC/TRiP Functional Genomics Resources

powered by:

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Mhc and myo1f

DIOPT Version :10

Sequence 1:	NP_523587.4	Gene:	Mhc / 35007	FlyBaseID:	FBgn0264695	Length:	1962	Species:	Drosophila melanogaster
Sequence 2:	XP_002938604.1	Gene:	myo1f / 100493342	XenbaseID:	XB-GENE-5909751	Length:	1095	Species:	Xenopus tropicalis

Alignment Length:	31	Identity:	8/31 - (25%)
Similarity:	16/31 - (51%)	Gaps:	0/31 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly   243 LRHCLARVAQDRAEKELNEIISMHQRVLDCV 273
            |||.|..:.:...:.|:..::|.|:....|:
Frog   109 LRHVLVSLGEKMTDDEVETLLSNHEDANGCI 139

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Mhc	NP_523587.4	Myosin_N	33..75	CDD:460670
		MYSc_Myh1_insects_crustaceans	100..765	CDD:276874	8/31 (26%)
		Myosin_tail_1	842..1922	CDD:460256
myo1f	XP_002938604.1	MYSc_Myo1	31..677	CDD:276829	8/31 (26%)
		Myosin_TH1	717..915	CDD:461801
		PHA03378	<958..>1041	CDD:223065
		SH3_MyoIe_If_like	1042..1094	CDD:212761
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.