DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhc and LOC100485637

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:XP_002939061.1 Gene:LOC100485637 / 100485637 -ID:- Length:1937 Species:Xenopus tropicalis


Alignment Length:1916 Identity:1070/1916 - (55%)
Similarity:1428/1916 - (74%) Gaps:11/1916 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 YLFVSLEQRRIDQSKPYDSKKSCWIPDEKEGYLLGEIKATKGDIVSVGLQGGEVRDIKSEKVEKV 80
            ||..|.::|...|::.:|.||:.::||:||.::...:.:.:|:.::...:.|:...:|..:|.:.
 Frog    15 YLRKSDKERLEAQTRVFDLKKNIYVPDDKEEFVKALVVSREGEKITAETEHGKSVVVKDTQVMQQ 79

  Fly    81 NPPKFEKIEDMADMTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRG 145
            |||||:||||||.:|.|:.|.||:||::||.|.:||||||||||.:||||..|||.......|||
 Frog    80 NPPKFDKIEDMAMLTFLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNTEVVAAYRG 144

  Fly   146 KRRNEVPPHIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYF---ATVGASKKTDE 207
            |:|:|.|||||:|||.||..|||:..|||:|||||||||||.|||:||.||   |:||..|| |.
 Frog   145 KKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAYIASVGERKK-DT 208

  Fly   208 AAKSKGSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARV 272
            ::..||:||||::|.||.|||||||||||||||||||||||||||.|||||.||||||||||:||
 Frog   209 SSAGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRV 273

  Fly   273 ISQQSLERSYHIFYQIMSGSVPGVKDICLLTDNIYDYHIVSQGKVTVASIDDAEEFSLTDQAFDI 337
            |.|...||.|||||||:|...|.:.::.|:|:|.|||..||||:.||||||||:|...||.|||:
 Frog   274 IFQLKSERDYHIFYQILSNKKPELLEMLLITNNPYDYSYVSQGETTVASIDDADELMATDSAFDV 338

  Fly   338 LGFTKQEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPR 402
            ||||::||..:|::|.|:||.|.|:|||:.||||||.||.||..:.:.|.|.::|:|.|.|..||
 Frog   339 LGFTQEEKNSIYKLTGAIMHCGNMRFKQKQREEQAEPDGTEEADKAAYLKGLNSADLLKGLCHPR 403

  Fly   403 IKVGNEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIF 467
            :|||||:||:|:.|:||..:.|||.|.|::::|.|:|.:.|.||:|:|.||:|||||||||||||
 Frog   404 VKVGNEYVTRGQTVEQVNYATGALAKSVYEKMFLWMVVRINATLETKQPRQYFIGVLDIAGFEIF 468

  Fly   468 EYNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIEKPMGILSI 532
            ::|.||||||||||||||||||||||||||||||:|||:|.||||||||.||||||||||||:||
 Frog   469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWVFIDFGMDLQACIDLIEKPMGIMSI 533

  Fly   533 LEEESMFPKATDQTFSEKLTNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCVSYNITGWLEKN 597
            ||||.|||||:|.||..||.:.||||||.||||:..| |:..||||:.||||.|.|||..||.||
 Frog   534 LEEECMFPKASDTTFKAKLYDNHLGKSANFQKPRNIK-GKPEAHFALVHYAGTVDYNILNWLTKN 597

  Fly   598 KDPLNDTVVDQFKKSQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSAYKEQLNSLMTT 662
            |||||:|||..::||..|||..:||::||........|.|..|||..|.|||:.::|.||.|||.
 Frog   598 KDPLNETVVGLYQKSSLKLLAVLFANYAGADSVDPGTKKGTKKKGSTFQTVSALHRENLNKLMTN 662

  Fly   663 LRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMYPDFKMRYKIMC 727
            ||||.|||||||||||.|.|||:|..||||||.||||||||||||||||||::|.||:.||:|:.
 Frog   663 LRSTHPHFVRCIIPNETKAPGVMDNRLVMHQLRCNGVLEGIRICRKGFPNRILYGDFRQRYRILN 727

  Fly   728 PKLL---QGVEKDKKATEIIIKFIDLPEDQYRLGNTKVFFRAGVLGQMEEFRDERLGKIMSWMQA 789
            |..:   |.:: .:|..|.::..:::...||:.|:|||||:||:|||:||.|||||.:|::.:||
 Frog   728 PAAIPDGQFID-SRKGAEKLLASLEIDHTQYKFGHTKVFFKAGLLGQLEEMRDERLARIITRIQA 791

  Fly   790 WARGYLSRKGFKKLQEQRVALKVVQRNLRKYLQLRTWPWYKLWQKVKPLLNVSRIEDEIARLEEK 854
            .:||.|||..|||:.|:|.||.|:|.|:|.::.::.|||.||:.|:||||..:..|.|:..::|:
 Frog   792 QSRGVLSRIEFKKMVERRDALLVIQWNVRAFMGVKNWPWMKLYFKIKPLLKSAETEKEMQNMKEE 856

  Fly   855 AKKAEE-LHAAEVKVRKELEALNAKLLAEKTALLDSLSGEKGALQDYQERNAKLTAQKNDLENQL 918
            .::.:| |..:|.: |||||.....||.||..|...:..|:..|:|.:||..:|...|.:||.:|
 Frog   857 FQRLKEALEKSEAR-RKELEEKMVSLLQEKNDLQLQVQAEQDNLEDAEERCEQLIKNKINLEAKL 920

  Fly   919 RDIQERLTQEEDARNQLFQQKKKADQEISGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAH 983
            ::..|||..||:...:|..:|:|.:.|.|.|||||:||||.:.|.|::|...:::::|:.:|:|.
 Frog   921 KEQTERLEDEEEMNAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNMTEEMAA 985

  Fly   984 QDELINKLNKEKKMQGETNQKTGEELQAAEDKINHLNKVKAKLEQTLDELEDSLEREKKVRGDVE 1048
            .||:|.||.||||...|.:|:..::|||.|||:|.|.|.||||||.:|:||.|||:|||||.|:|
 Frog   986 LDEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNSLTKSKAKLEQQVDDLEGSLEQEKKVRMDLE 1050

  Fly  1049 KSKRKVEGDLKLTQEAVADLERNKKELEQTIQRKDKELSSITAKLEDEQVVVLKHQRQIKELQAR 1113
            :.|||:|||||||||::.|||.:|::||:.:::||.|:|.:..|:||||.|..:..:::||||||
 Frog  1051 RVKRKLEGDLKLTQESLMDLENDKQQLEEKLKKKDFEISQMNTKIEDEQNVASQLLKKLKELQAR 1115

  Fly  1114 IEELEEEVEAERQARAKAEKQRADLARELEELGERLEEAGGATSAQIELNKKREAELSKLRRDLE 1178
            |||||||:||||.||||.||.|:||:|||||:.|||||||||||.|:|||||||.|..|||||||
 Frog  1116 IEELEEELEAERAARAKVEKLRSDLSRELEEISERLEEAGGATSVQLELNKKREIEFLKLRRDLE 1180

  Fly  1179 EANIQHESTLANLRKKHNDAVAEMAEQVDQLNKLKAKAEKEKNEYYGQLNDLRAGVDHITNEKAA 1243
            |:.:|.|:|.|.|||||.|:|||::||:|.|.::|.|.||||:|...:|:|:.:.::.:...||.
 Frog  1181 ESTLQSEATAAALRKKHADSVAELSEQIDNLQRVKQKLEKEKSELKLELDDVASNMEQVIKGKAN 1245

  Fly  1244 QEKIAKQLQHTLNEVQSKLDETNRTLNDFDASKKKLSIENSDLLRQLEEAESQVSQLSKIKISLT 1308
            .||:.:.|:...||.::|.:||.||.||....:.||..||.:|.|:|:|.|:.||||::.|.:.|
 Frog  1246 LEKLCRTLEDQANEYRTKSEETQRTANDLSTQRAKLQTENGELTRRLDEKEALVSQLTRGKQTYT 1310

  Fly  1309 TQLEDTKRLADEESRERATLLGKFRNLEHDLDNLREQVEEEAEGKADLQRQLSKANAEAQVWRSK 1373
            .||||.||..:|||:.:..|....::..||.|.||||.|||.|.||:|||.|||||:|...||:|
 Frog  1311 QQLEDLKRQLEEESKAKNALAHALQSARHDCDLLREQYEEEQEAKAELQRILSKANSEVAQWRTK 1375

  Fly  1374 YESDGVARSEELEEAKRKLQARLAEAEETIESLNQKCIGLEKTKQRLSTEVEDLQLEVDRANAIA 1438
            ||:|.:.|:|||||||:||..||.||||.:|::|.||..|||||.||..|:|||.::::|:||.|
 Frog  1376 YETDAIQRTEELEEAKKKLAQRLQEAEEAVEAVNAKCSSLEKTKHRLQNEIEDLMVDLERSNAAA 1440

  Fly  1439 NAAEKKQKAFDKIIGEWKLKVDDLAAELDASQKECRNYSTELFRLKGAYEEGQEQLEAVRRENKN 1503
            .|.:|||:.||||:.|||.|.::..|||::||||.|:.|||||:||.:|||..|.||..:|||||
 Frog  1441 AALDKKQRNFDKILSEWKQKFEESQAELESSQKEARSLSTELFKLKNSYEESLEHLETFKRENKN 1505

  Fly  1504 LADEVKDLLDQIGEGGRNIHEIEKARKRLEAEKDELQAALEEAEAALEQEENKVLRAQLELSQVR 1568
            |.:|:.||.:|:||.|::|||:||.||:||.||.|||:||||||.:||.||.|:||.||||.|::
 Frog  1506 LQEEISDLTEQLGESGKSIHELEKVRKQLEQEKMELQSALEEAEGSLEHEEGKILRVQLELQQIK 1570

  Fly  1569 QEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHANK 1633
            .|.:|::.||:|||:..::|:|||:|::|||||||.:.:.||||:|||:|.|:||:||.|..||:
 Frog  1571 AEFERKLSEKDEEFDQAKRNNQRAVDTLQASLEAETRSRNEALRVKKKMEGDLNEMEIHLSQANR 1635

  Fly  1634 ANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISERRANALQNELEESRTLLEQADRGR 1698
            ..:||||.:|..|..|||.|..|::..|..:|.:|...|.|||...||.||||.|::|||.:|.|
 Frog  1636 IASEAQKQLKNLQGVLKDTQLQLDDTLRINEDLKENTAIVERRNTLLQAELEELRSILEQTERSR 1700

  Fly  1699 RQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELLNEAKNSEEKAKKAMVDAAR 1763
            :.|||||.:.:|::..:.:||.|:...|:|:|::|..|..:::|.:.|.:|:|||||||:.|||.
 Frog  1701 KLAEQELIETNERVQLLHSQNTSLINQKKKMENDLSQLQGEVEEAVQECRNAEEKAKKAITDAAM 1765

  Fly  1764 LADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGE 1828
            :|:||:.|||.:...|:::|.:||.||:||.||||||..|:|||||.:||||.|||||:|||:.|
 Frog  1766 MAEELKKEQDTSAHLERMKKNMEQTIKDLQQRLDEAEQIAMKGGKKQLQKLEARVRELDNELEAE 1830

  Fly  1829 QRRHADAQKNLRKSERRVKELSFQSEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAALNLA 1893
            |:|:|::.|.:||.|||:|||::|:||||||..|:||||||||.|:|.||||.|||||.:.:||:
 Frog  1831 QKRNAESVKGMRKYERRIKELTYQTEEDRKNLIRLQDLVDKLQLKVKGYKRQAEEAEEQSNMNLS 1895

  Fly  1894 KFRKAQQELEEAEERADLAEQAISKFRAKGR 1924
            :|||.|.||:|||||||:||..::|.:.|.|
 Frog  1896 RFRKVQHELDEAEERADIAESQVNKMKTKSR 1926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832 7/36 (19%)
MYSc 81..777 CDD:214580 447/701 (64%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 426/670 (64%)
Myosin_tail_1 842..1897 CDD:279860 556/1055 (53%)
V_Alix_like 1557..1877 CDD:187408 168/319 (53%)
ATP-synt_B <1671..1771 CDD:304375 46/99 (46%)
TMPIT 1739..>1825 CDD:285135 49/85 (58%)
LOC100485637XP_002939061.1 COG5022 37..1432 CDD:227355 790/1398 (57%)
MYSc_class_II 99..767 CDD:276951 426/670 (64%)
SMC_prok_B 1215..>1928 CDD:274008 379/712 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 1116 1.000 Domainoid score I21
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68044
Inparanoid 1 1.050 2089 1.000 Inparanoid score I44
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D41153at33208
OrthoFinder 1 1.000 - - FOG0000014
OrthoInspector 1 1.000 - - otm48957
Panther 1 1.100 - - O PTHR45615
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X58
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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