DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhc and myo1e.1

DIOPT Version :9

Sequence 1:NP_001162991.1 Gene:Mhc / 35007 FlyBaseID:FBgn0264695 Length:1962 Species:Drosophila melanogaster
Sequence 2:NP_001121497.2 Gene:myo1e.1 / 100158599 XenbaseID:XB-GENE-1005591 Length:1108 Species:Xenopus tropicalis


Alignment Length:1023 Identity:312/1023 - (30%)
Similarity:506/1023 - (49%) Gaps:147/1023 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 KFEKIEDMADMTVLNTPCVLHNLRQRYYAKLIYTYSGLFCVAINPYKRYPVYTNRCAKMYRGKRR 148
            |...::||..::.:....::.||::||....|:||.|...:::||:|:.|.:.::..:||:|..:
 Frog    17 KHSGVDDMVLLSKITEDSIVDNLKKRYMDDFIFTYIGPVLISVNPFKQMPYFGDKEIEMYQGAAQ 81

  Fly   149 NEVPPHIFAISDGAYVDMLTNHVNQSMLITGESGAGKTENTKKVIAYFATV-GASKKTDEAAKSK 212
            .|.||||:|::|..|.:|:.:..||.::|:||||||||...|.:::|.:.| |...|...     
 Frog    82 YENPPHIYALADNMYRNMIIDRENQCVIISGESGAGKTVAAKYIMSYISKVSGGGPKVQH----- 141

  Fly   213 GSLEDQVVQTNPVLEAFGNAKTVRNDNSSRFGKFIRIHFGPTGKLAGADIETYLLEKARVISQQS 277
              ::|.::|:||:||||||||||||:|||||||:..|.|.|.|:..|..|..:||||:||:.:..
 Frog   142 --VKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYFEIQFSPGGEPDGGKISNFLLEKSRVVMRNP 204

  Fly   278 LERSYHIFYQIMSGSVPGVKDICLLTDNIYDYHIVSQGKVTVASIDDAEEFSLTDQAFDILGFTK 342
            .|||:|||||::.|:....::...:|...|..::...|...|..|:|..:|..|..|.:::|.:.
 Frog   205 GERSFHIFYQLIEGASKDQRESLGITSLDYYNYLNQSGSYKVDDINDKRDFQETMHAMNVIGISA 269

  Fly   343 QEKEDVYRITAAVMHMGGMKFKQRGREEQAEQDGEEEGGRVSKLFGCDTAELYKNLLKPRI--KV 405
            :.:..|.:|.|.|:|:|.:.||::|  ..|..:.||.....:.|.|.:.:.|...|...::  |.
 Frog   270 EGQAMVMQIVAGVLHLGNIGFKEKG--NYAAVENEEFLAFPAFLLGINQSRLKDKLTSRQMDSKW 332

  Fly   406 G--NEFVTQGRNVQQVTNSIGALCKGVFDRLFKWLVKKCNETLDTQQKRQHFIGVLDIAGFEIFE 468
            |  :|.:....||:|...:..||.|.:..|:|.:||...|:.: .:...::.||||||.|||||:
 Frog   333 GGKSESINVTLNVEQACYTRDALSKALHSRVFDYLVDSINKAM-KKDHEEYNIGVLDIYGFEIFQ 396

  Fly   469 YNGFEQLCINFTNEKLQQFFNHHMFVLEQEEYKREGIDWAFIDFGMDLLACIDLIE---KPMGIL 530
            .|||||.||||.||||||.|.......|||||.:|||.|..|::..:.:.| ||||   .|.|::
 Frog   397 KNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVQEGIRWTPIEYFNNKIVC-DLIENKVNPPGVM 460

  Fly   531 SILEEESMFPKA----TDQTFSEKL-----TNTHLGKSAPFQKPKPPKPGQQAAHFAIAHYAGCV 586
            |||::......|    .|||..:||     |:.|...            ..|.  |.|.||||.|
 Frog   461 SILDDVCATMHAVGEGADQTLLQKLQMAVGTHEHFNS------------WNQG--FIIHHYAGKV 511

  Fly   587 SYNITGWLEKNKDPLNDTVVDQFKKSQNKLLIEIFADHAGQSGGGEQAKGGRGKKGGGFATVSSA 651
            ||::.|:.|:|:|.|...:::..:.||...:..:|.::.            :.:|.|...|..|.
 Frog   512 SYDVDGFCERNRDVLFMDLIELMQSSQQPFMQALFPENL------------QAEKKGRPTTAGSK 564

  Fly   652 YKEQLNSLMTTLRSTQPHFVRCIIPNEMKQPGVVDAHLVMHQLTCNGVLEGIRICRKGFPNRMMY 716
            .|:|.|.|:.||....||::|||.|||.|:|...:...|.||:...|:.|.||:.|.|:..|.::
 Frog   565 IKKQANDLVNTLMKCTPHYIRCIKPNETKKPRDWEESRVKHQVEYLGLKENIRVRRAGYAYRRVF 629

  Fly   717 PDFKMRYKIMCPKLLQGVEKD-KKATEIIIKFIDLPEDQYRLGNTKVFFRA-GVLGQMEEFRDER 779
            ..|..||.|:..:.....:.| ||....::..:::..||::||.||:|.:| ..|..:||.|:.:
 Frog   630 KKFLQRYAILTKETWPSWKGDEKKGVLHLLHSVNMDSDQFQLGKTKIFIKAPESLFLLEEMRERK 694

  Fly   780 L-GKIMSWMQAWARGYLSRKGFKKLQEQRVALKVVQRNLRK----------YLQLRTWPWYKLWQ 833
            . |...|..:|| |.|::||.:.:::||...|.:.::..|:          |:.:          
 Frog   695 YDGYARSIQKAW-RKYVARKKYVQMREQASDLFLNKKERRRNSINRNFIGDYIGM---------- 748

  Fly   834 KVKPLLNVSRIEDEIARLEEKAKKAEELHAAEVKVRKELEALNAK---LLAEKTALL---DSL-- 890
                        ||...|.:...|.|::..|:...:.:..:...|   :|..|:..|   |.:  
 Frog   749 ------------DERPELRQFVGKREKIDFADTVTKYDRRSKGVKRDLILTPKSVYLIGRDKMKQ 801

  Fly   891 SGEKGALQDYQERNAKLTAQKNDLEN----QLRDIQERL----TQEEDA-RNQLFQQKKKADQEI 946
            ..|||.:::       :..:|.|:|.    .|..:|:..    .||.|: ...||:     .:.|
 Frog   802 GPEKGLVKE-------VLKKKIDVERILSVSLSTMQDDFFILHEQEYDSLLESLFK-----TEFI 854

  Fly   947 SGLKKDIEDLELNVQKAEQDKATKDHQIRNLNDEIAHQDELINKLNKEK--KMQGETNQKTGEEL 1009
            |.|.|..|      :|.::....|.:.|.::            ||.||.  ...|....:..:.:
 Frog   855 SLLSKHYE------EKTQRKLPLKFNNILDM------------KLKKENWGPWSGGAGSRQVQFI 901

  Fly  1010 QAAED--KINHLNKV-KAKLEQTLDELEDSLEREKKV---RGDVEKSK 1051
            |...|  .:.|.:|| :..:.|.|.  ::|....:.:   ||:..|||
 Frog   902 QGFGDLAVLKHSSKVLQVSIGQGLP--KNSRPTRRNITNGRGNASKSK 947

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhcNP_001162991.1 Myosin_N 36..73 CDD:280832
MYSc 81..777 CDD:214580 248/711 (35%)
MYSc_Myh1_insects_crustaceans 100..765 CDD:276874 241/682 (35%)
Myosin_tail_1 842..1897 CDD:279860 50/235 (21%)
V_Alix_like 1557..1877 CDD:187408
ATP-synt_B <1671..1771 CDD:304375
TMPIT 1739..>1825 CDD:285135
myo1e.1NP_001121497.2 MYSc_Myo1 33..679 CDD:276829 241/682 (35%)
Myosin_TH1 719..921 CDD:368706 47/253 (19%)
SH3_MyoIe_If_like 1055..1107 CDD:212761
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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