DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LSm7 and LSM5

DIOPT Version :10

Sequence 1:NP_609807.1 Gene:LSm7 / 35003 FlyBaseID:FBgn0261068 Length:110 Species:Drosophila melanogaster
Sequence 2:NP_011073.1 Gene:LSM5 / 856889 SGDID:S000000948 Length:93 Species:Saccharomyces cerevisiae


Alignment Length:73 Identity:17/73 - (23%)
Similarity:40/73 - (54%) Gaps:1/73 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRG 88
            :.|.:.:::.:.....||..|.|.|:|..:|::|::.||:|.|.::..: .|:..:..|.::..|
Yeast    12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESR-NEKVMQHHGRMLLSG 75

  Fly    89 TALVLICP 96
            ..:.::.|
Yeast    76 NNIAILVP 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm7NP_609807.1 LSm7 18..107 CDD:212476 17/73 (23%)
LSM5NP_011073.1 LSm5 6..85 CDD:212479 17/73 (23%)

Return to query results.
Submit another query.