DRSC/TRiP Functional Genomics Resources

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Protein Alignment LSm7 and LSM1

DIOPT Version :10

Sequence 1:NP_609807.1 Gene:LSm7 / 35003 FlyBaseID:FBgn0261068 Length:110 Species:Drosophila melanogaster
Sequence 2:NP_012411.1 Gene:LSM1 / 853318 SGDID:S000003660 Length:172 Species:Saccharomyces cerevisiae


Alignment Length:127 Identity:33/127 - (25%)
Similarity:56/127 - (44%) Gaps:34/127 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NNDGKEKRRK--------ESILDLSKY-----------LEKQIRVKFAGGREASGILKGYDALLN 54
            |.|.|.:::.        |:.|.|.:|           ::::|.|....||...|:|:.:|...|
Yeast    12 NQDAKRQQQNFPKKISEGEADLYLDQYNFTTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYAN 76

  Fly    55 LVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCRGTALVLI---------CPQDGVESIANPF 107
            |:|.:.||.:..|:| .|..||..   |:.:.||..:|::         .|.:.:|.|  ||
Yeast    77 LILQDCVERIYFSEE-NKYAEEDR---GIFMIRGENVVMLGEVDIDKEDQPLEAMERI--PF 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm7NP_609807.1 LSm7 18..107 CDD:212476 28/116 (24%)
LSM1NP_012411.1 LSm1 40..115 CDD:212475 21/78 (27%)

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