DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LSm7 and LSM8

DIOPT Version :10

Sequence 1:NP_609807.1 Gene:LSm7 / 35003 FlyBaseID:FBgn0261068 Length:110 Species:Drosophila melanogaster
Sequence 2:NP_001185323.1 Gene:LSM8 / 842881 AraportID:AT1G65700 Length:141 Species:Arabidopsis thaliana


Alignment Length:79 Identity:25/79 - (31%)
Similarity:34/79 - (43%) Gaps:24/79 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVE------------YLRDSDEPYKLTEE 76
            |...:::.|.|....||...|:|||:|...|::||.:.|            .||      |||  
plant     7 LETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR------KLT-- 63

  Fly    77 QTRSLGLV----VC 86
            |...:|||    ||
plant    64 QIFKIGLVLQFFVC 77

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm7NP_609807.1 LSm7 18..107 CDD:212476 25/79 (32%)
LSM8NP_001185323.1 LSm8 7..137 CDD:212474 25/79 (32%)

Return to query results.
Submit another query.