DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LSm7 and snrpe

DIOPT Version :10

Sequence 1:NP_609807.1 Gene:LSm7 / 35003 FlyBaseID:FBgn0261068 Length:110 Species:Drosophila melanogaster
Sequence 2:NP_001005147.1 Gene:snrpe / 448738 XenbaseID:XB-GENE-5922245 Length:92 Species:Xenopus tropicalis


Alignment Length:102 Identity:23/102 - (22%)
Similarity:47/102 - (46%) Gaps:18/102 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GNNDGKEKRRKESILDLSKYLEKQIRVKF----AGGREASGILKGYDALLNLVLDNTVEYLRDSD 68
            |.....:|...:.|..:.:||:.:.|::.    .......|.:.|:|..:|||||       |::
 Frog     5 GQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLD-------DAE 62

  Fly    69 EPYKLTEEQTRSLGLVVCRGTALVLICPQDGVESIAN 105
            |.:..|:.: :.||.::.:|..:.|:      :|:.|
 Frog    63 EIHLKTKSR-KQLGRIMLKGDNITLL------QSVMN 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm7NP_609807.1 LSm7 18..107 CDD:212476 21/92 (23%)
snrpeNP_001005147.1 Sm_E 11..89 CDD:212465 20/91 (22%)

Return to query results.
Submit another query.