DRSC/TRiP Functional Genomics Resources

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Protein Alignment LSm7 and snrpg

DIOPT Version :10

Sequence 1:NP_609807.1 Gene:LSm7 / 35003 FlyBaseID:FBgn0261068 Length:110 Species:Drosophila melanogaster
Sequence 2:NP_001004660.2 Gene:snrpg / 447922 ZFINID:ZDB-GENE-040912-105 Length:76 Species:Danio rerio


Alignment Length:72 Identity:24/72 - (33%)
Similarity:45/72 - (62%) Gaps:9/72 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 DLSKYLEKQIRVKFAGGREASGILKGYDALLNLVLDNTVEYLRDSDEPYKLTEEQTRSLGLVVCR 87
            :|.|:::|::.:|..|||...|||:|:|..:|||:|:|:|.....         |..::|:||.|
Zfish     8 ELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGG---------QMNTIGMVVIR 63

  Fly    88 GTALVLI 94
            |.:::::
Zfish    64 GNSIIML 70

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LSm7NP_609807.1 LSm7 18..107 CDD:212476 24/72 (33%)
snrpgNP_001004660.2 Sm_G 5..74 CDD:212466 24/72 (33%)

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