DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment glu and Smc1a

DIOPT Version :9

Sequence 1:	NP_723996.1	Gene:	glu / 35001	FlyBaseID:	FBgn0015391	Length:	1409	Species:	Drosophila melanogaster
Sequence 2:	NP_113871.2	Gene:	Smc1a / 63996	RGDID:	61991	Length:	1233	Species:	Rattus norvegicus

Alignment Length:	1327	Identity:	352/1327 - (26%)
Similarity:	611/1327 - (46%)	Gaps:	231/1327 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    96 NFKSYAGEVELGPFHQSFTAIIGPNGSGKSNVIDSMMFVFGCRANRIRCKRVSTLIHSSS-SYPN 159
            |||||.|...:||| |.||||||||||||||::|::.||.|.:.:.:|.|.:..|||.:. ..|.
  Rat    11 NFKSYKGRQIIGPF-QRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRDLIHGAPVGKPA 74

  Fly   160 LRSCSVAVHFKQIVDKGDGTCEDVPDSSIVIERTAMSDNSSYYQINDKRAQLKDVAKLLKKHHVD 224
            .....|::.:.:     :| .||...:.:::      ..||.|:||:|..||.:.::.|:|..:.
  Rat    75 ANRAFVSMVYSE-----EG-AEDRTFARVIV------GGSSEYKINNKVVQLHEYSEELEKLGIL 127

  Fly   225 LEHNRFLILQGEVESIAMMKPKGQTENETGMLEYLEDIVGTQRYIRPLQQINQRVDQLTDDRTEK 289
            ::...||:.||.||||||..||.:|       ...|:|..:....:...:..:.:.:..:|....
  Rat   128 IKARNFLVFQGAVESIAMKNPKERT-------ALFEEISRSGELAQEYDKRKKEMVKAEEDTQFN 185

  Fly   290 HNRCKLAEREMKDLEQPFNEAVDYLKKENELVRT-------KSFH-------IQKIISIKKSKLE 340
            ::|.|....|.|:.:|...||..|.:.::|:||.       |.:|       :.|.::.|..::|
  Rat   186 YHRKKNIAAERKEAKQEKEEADRYQRLKDEVVRAQVQLQLFKLYHNEVEIEKLNKELASKNKEIE 250

  Fly   341 QYTQEHEACAEELKTHDEGTAALKQSRAEKETIIRKEIEEYEA--------LVKKREQIKKRLVT 397
            :..:..:...:|||...:...  |..|.:::  |.|||:|.::        .:|.:|....::..
  Rat   251 KDKKRMDKVEDELKEKKKELG--KMMREQQQ--IEKEIKEKDSELNQKRPQYIKAKENTSHKIKK 311

  Fly   398 VESAYTEIQSTMENTNKQRKKDKAQIEKNEKELEDLHK--------LPEKNQREIEDCN------ 448
            :|:|    :.:::|..|..||.|..:::.|||:..:.|        :.|::|.:..|..
  Rat   312 LEAA----KKSLQNAQKHYKKRKGDMDELEKEMLSVEKARQEFEERMEEESQSQGRDLTLEENQV 372

  Fly   449 KKLESL--EVSK--VTLNEELEK----QQAELTKTTAPLTEKRLKLSDELVGLKEKVNTAKGEVQ 505
            ||...|  |.||  .||.:||||    |:|:         :.||.|.:     ::||.|
  Rat   373 KKYHRLKEEASKRAATLAQELEKFNRDQKAD---------QDRLDLEE-----RKKVET------ 417

  Fly   506 VFESQLKILKQAETTESRK-YETLKSSYEQSQKSLEEKVTRVDELKESIPRMKTEIASKSAEVDK 569
              |:::| .|..|..|::| .|.|:.....|::||||:.....||.|.:     |:|.:  .:|:
  Rat   418 --EAKIK-QKLREIEENQKRIEKLEEYITTSKQSLEEQKKLEGELTEEV-----EMAKR--RIDE 472

  Fly   570 MVKEERNLSMQCNKLRTEINERSSVMQAQRSNNKVLDFLMRMKMEGKIPG-ILGRLGDL-GGIDA 632
            :.||...:..|....|.:..|.|    .|:...::::.:.|:     .|| :.|||.|| .....
  Rat   473 INKELNQVMEQLGDARIDRQESS----RQQRKAEIMESIKRL-----YPGSVYGRLIDLCQPTQK 528

  Fly   633 KYDIAISTACGR-LDNIVTDNYETASAAIGALKEYNVGRATFITLDKIEHHRREANSRINTPENV 696
            ||.||::...|: :|.|:.|:.:|....|..:||......||:.||.:|  .:..:.::...:..
  Rat   529 KYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLE--VKPTDEKLRELKGA 591

  Fly   697 PRLYDLVKVEDDRVRTAFYFALRNTLVCDDLEQGTRIAY-GRERYRVVTLRGEMIEMTGTMSGGG 760
            ..:.|:::.|...::.|..:|..|.||||::|...|||: |.:|::.|.|.|.:.:.:|.:|||.
  Rat   592 KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTVALDGTLFQKSGVISGGA 656

  Fly   761 S------RPIRGKMGTQVRTKTAESADSSQISQKA------LEDMQIQAEELQARVNYCQ----- 808
            |      |....|...:::.|.....:..:...||      |..:|.||..||.|:.|.|
  Rat   657 SDLKAKARRWDEKAVDKLKEKKERLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLEQ 721

  Fly   809 ----------EQQGSLERE-------IQTLKNGLQRDEAEYKRLAVSITSLEQQMASNLKQCEAQ 856
                      :::..||.|       |..:|..:|..|.|.|.|...:..:|.::....  |...
  Rat   722 TKTRHLALNLQEKSKLESELANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEF--CREI 784

  Fly   857 RQRMLKKTTDERAVKEREEQIEAAKQELE-QAQFAEQAVSSQIEEIQNQYDTLRNESVKPVEAKI 920
            ..|.:::..:|:.    :.|.|.||:.|| :.|.....:....|:.|.:.|   .:.|...|..:
  Rat   785 GVRNIREFEEEKV----KRQNEIAKKRLEFENQKTRLGIQLDFEKNQLKED---QDKVHMWEQTV 842

  Fly   921 KKVNSQIEKLAANVRSLNVGLATADRNITKITGNNNNLRENIKAAEEKLKSLNEDRNKAKEKKEE 985
            ||..::||||                        ....:.::|..:|.:..|.:.:|:...||.|
  Rat   843 KKDENEIEKL------------------------KKEEQRHMKIIDETMAQLQDLKNQHLAKKSE 883

  Fly   986 L---EKEIEESEASIEGAKSQSSDIKKEIDEI-TKEENKRNIERIEI-------DTKLQAAAGKM 1039
            :   ..|:||....:.||..:.:.::||:..| ||.|.||: :|..:       |.||..:.|.|
  Rat   884 VNDKNHEMEEIRKKLGGANKEMTHLQKEVTAIETKLEQKRS-DRHNLLQACKMQDIKLPLSKGTM 947

  Fly  1040 NKVKNDIPGWQAQLAPLKLNEIPG----------ETEPQAPLKELNEEELEAETLEALQYKQTML 1094
            :.:..:..|.|.:      ..:.|          |...:....:|.|:..:|:..|.::.:...|
  Rat   948 DDISQEEGGSQGE------ESVSGSQRTSSIYAREALIEIDYGDLCEDLKDAQAEEEIKQEMNTL 1006

  Fly  1095 EEDLKTKKPNLSCIKEFNEKRLVYLDRVR--------VLEDITSKRNEMRDKYEEVRKRRYKEFM 1151
            ::.|..::..|..|...|.|.:..|:.||        ..|....:..:.:..:|:::|.|:..|.
  Rat  1007 QQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFN 1071

  Fly  1152 DGFSIITRKLKEMYQMITLGGDAELEL--VDSMDPFTEGVNFTVRPPKKSWKYISNLSGGEKTLS 1214
            ..|..:...:.|:|:.::....|:..|  .:..:|:.:|:|:....|.|.::.:.||||||||::
  Rat  1072 ACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVA 1136

  Fly  1215 SLALVFALHYYKPSPLYFMDEIDAALDFKNVSIVGHYIKER-TKNAQFIIVSLRVNMFELANFLV 1278
            :|||:||:|.|||:|.:.:||||||||..|:..|.:||||: |.|.|.|::||:...:..|..|:
  Rat  1137 ALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKEQSTCNFQAIVISLKEEFYTKAESLI 1201

  Fly  1279 GIY-KVSDCTDS----ITMLNYPPTLP 1300
            |:| :..||..|    ..:..||...|
  Rat  1202 GVYPEQGDCVISKVLTFDLTKYPDANP 1228

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
glu	NP_723996.1	ABC_SMC4_euk	87..>246	CDD:213241	58/150 (39%)
		Smc	89..1281	CDD:224117	345/1301 (27%)
		SMC_hinge	618..733	CDD:214944	34/117 (29%)
		ATP-synt_B	<825..904	CDD:304375	18/79 (23%)
		ABC_SMC4_euk	<1196..1290	CDD:213241	47/99 (47%)
Smc1a	NP_113871.2	SMC_N	3..1210	CDD:308206	346/1307 (26%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	284..307		4/22 (18%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	350..369		3/18 (17%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	946..969		4/28 (14%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG1196
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D326079at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820