DRSC/TRiP Functional Genomics Resources

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Protein Alignment glu and Smc6

DIOPT Version :9

Sequence 1:NP_723996.1 Gene:glu / 35001 FlyBaseID:FBgn0015391 Length:1409 Species:Drosophila melanogaster
Sequence 2:NP_001101484.1 Gene:Smc6 / 313961 RGDID:1311214 Length:1097 Species:Rattus norvegicus


Alignment Length:1367 Identity:267/1367 - (19%)
Similarity:517/1367 - (37%) Gaps:393/1367 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 QQLRAQQQQEEEDAAVDALDDALIFDDEEGGTRIGDIYIPPPVPPHCSMESTGPRLIISKIVNRN 96
            :..:..:|:|.||...|..:|........|.:.:             :....|   ||..|..||
  Rat    13 ENAKRPRQEELEDFDKDGDEDECTISFTNGTSTL-------------TAAEVG---IIESIQLRN 61

  Fly    97 FKSYAGEVELGPFH--QSFTAIIGPNGSGKSNVIDSMMFVFGCRANRIRCKRVSTLIHSSSSYPN 159
            |..::   .||||.  .:...::|.||||||.|:.:::...|.:|  :...|.|:|.....:..|
  Rat    62 FMCHS---MLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKA--VATNRGSSLKGFVKAGQN 121

  Fly   160 LRSCSVAVHFKQIVDKGDGTCE-DVPDSSIVIERTAMSDNSSYYQINDKRAQL-----KDVAKLL 218
            ....|:.:.     ::||.... :|...|||:::....|.|..|::..::..:     :::..:|
  Rat   122 SADISITLR-----NRGDDAFRANVYGDSIVVQQHISVDGSRSYKLKSEKGTVVSTRKEELIAIL 181

  Fly   219 KKHHVDLEHNRFLILQGEVESIAMMKPKGQTENETGMLEY------LEDIVGTQRYI-----RPL 272
            ...::.:: |...:|..|     |.|...|::||....::      ||.:.....||     |..
  Rat   182 DHFNIQVD-NPVSVLTQE-----MSKQFLQSKNEGDKYKFFMKATQLEQMKEDYSYIMETKERTK 240

  Fly   273 QQINQRVDQLTDDR---TEKHNRC------------------KLAEREMKDLEQPFNEAVDYL-- 314
            :||||..::||:.:   .||..|.                  ::|...:.::|:..|...|.:  
  Rat   241 EQINQGEERLTELKRQCLEKEERFQNIAGLSTMKTNLEYLKHEMAWAVVNEIEKQLNAIRDNIKI 305

  Fly   315 ----------KKENELVRTKSFHIQKIISIKKSKLEQYTQEHEACAEE---LKTHDEGTAALKQS 366
                      |.|.:.||...  .:|.....:.|||:.::|..|.|.|   |||.     .:.::
  Rat   306 GEERAAKLDRKMEEQQVRLND--AEKKYKDIQDKLEKISEETNARAPECMALKTD-----VIART 363

  Fly   367 RA--EKETIIRKEIEEYEALVKKREQIKKRLVTVESAYTEIQSTMENTNKQRKKDKAQIEKNEKE 429
            ||  :.|.:..:.:.||:||.|..||:.||:                  ::.||      ..::.
  Rat   364 RAFNDAEVLYNRSLNEYKALKKDGEQLCKRI------------------EELKK------STDQS 404

  Fly   430 LEDLHKLPEKNQREIEDC--NKKLESLEVSKVTLNEELEKQQAELTKTTAPLTEKRLKLSDELVG 492
            ||     ||:.:|:...|  .:|:::|:..:.|:|:|:|:.:..:.|.           ..|.|.
  Rat   405 LE-----PERLERQKRICWLKEKVKALQDQENTVNQEVEQFEQAIEKD-----------KQEHVR 453

  Fly   493 LKEKVNTAKGEVQVFESQLKILKQAETTESRKY--------ETLKSSYEQSQKSLEEKVTRVDEL 549
            :|.:....:..:...:.|||.||.::|...:::        |.:..:|.:.|.:.:.    :..|
  Rat   454 IKREDVEVRHTLSYNQRQLKELKDSKTDRLKRFGPHVPALLEAIDDAYRRRQFTHKP----IGPL 514

  Fly   550 KESIPRMKTEIASKSAEVDKMVK------------EERNLSMQCNKLRTEINERSSVMQAQRSNN 602
            ...|.....|:|   ..::..:|            :||.|.....|.......|..::.:: ..|
  Rat   515 GACIHLRDPELA---LAIESCLKGLLQAYCCHNHADERVLQSLMKKFYPPGTSRPQIIVSE-FRN 575

  Fly   603 KVLDFLMRMKMEGKIPGILGRLGDLGGIDAKYDIAISTACGRLDNIVTDN-------YETASAAI 660
            :|.|..:|.....:.|.:|..|                   .:||.|..|       .||    :
  Rat   576 EVYDVRLRAAYHPEFPTVLTAL-------------------EIDNAVVANSLIDMRSIET----V 617

  Fly   661 GALKEYNVGRATFITLDKIEHHRREANSRINTPENVPRLYDLVKVEDDRVRTAFYFALRNTLVCD 725
            ..:|..:|.||.      ::..:...|.|           :....:.|:|....|::..:|    
  Rat   618 LLIKNNSVARAV------MQSQKPPKNCR-----------EAFTADGDQVFAGRYYSSEST---- 661

  Fly   726 DLEQGTRIAYGRERYRVVTLRGEMIEMTGTMSGGGSRPIRGKMGTQVRTKTAESADSSQISQKAL 790
                                                           |.|.......|:||    
  Rat   662 -----------------------------------------------RPKFLSRDVDSEIS---- 675

  Fly   791 EDMQIQAEELQARVNYCQEQQGSLEREIQTLKNGLQRDEAEYKRLAVSITSLEQQMASNLKQCE- 854
             |::.:.|..:..:...|.:..:||::|:..:..|:|.:..||.:.:.|    ::..|.:::.| 
  Rat   676 -DLETEIENKKGHIMNLQHRLSALEKDIKRNEELLKRCQLHYKEIKMKI----RKNISEIRELEN 735

  Fly   855 AQRQRMLKKTTDERAVKEREEQIEAAKQELEQAQFAEQAVSSQIEEIQNQYDTLRNESVKPVEAK 919
            .:..:.:...|.|...:|.:.:::..::.:||.:...:.:.:...|.:|:|||::          
  Rat   736 IEEHQSVDIATLEDEAEENKIKMQMVEKNMEQQKENMENLKTLKIEAENKYDTIK---------- 790

  Fly   920 IKKVNSQIEKLAANVRSLNVGLATADRNITKITGNNNNLRENIKAAEEKLKSLNEDRNKAKEKKE 984
             .|:| |:.:||                        :.|::.:..|:.::.|    :.:.|:..|
  Rat   791 -LKIN-QLSELA------------------------DPLKDELNLADSEVDS----QKRGKQHYE 825

  Fly   985 ELEKEIEESEASIEGAKSQSSDIKKEIDEITKEENKRNIERIEIDTKLQAAAGKMNKVKNDIPGW 1049
            :.:||                    .:|.:.|       :|.|:|.|.:....||::.:      
  Rat   826 DKQKE--------------------HMDTLNK-------KRRELDMKEKELQEKMSQAR------ 857

  Fly  1050 QAQLAPLKLNEIPGETEPQAPL--KELN--EEELEAETLEALQYKQTMLEEDLKTKKPNLSCIKE 1110
              |:.|.::     |.:..|.:  ||:|  .::::||.......::.|               |:
  Rat   858 --QICPERI-----EVKKSASILDKEINRLRQKIQAEHASHGDREEIM---------------KQ 900

  Fly  1111 FNEKRLVYLDRVRVLEDITSKRNEMR---DKYEEVRKRRYKEFMDGFSIITRKLKEMYQMITLGG 1172
            :.|.|..||       |:.||...:|   ...||:...|||.:......:|.:.| :|....|..
  Rat   901 YQEARETYL-------DLDSKVRTLRRFIKLLEEIMTHRYKTYQQFRRCLTLRCK-LYFDNLLSQ 957

  Fly  1173 DAELELVDSMDPFTEGVNFTVRP---PKKSWKYISNLSGGEKTLSSLALVFALHYYKPSPLYFMD 1234
            .|....: :.|...|.::.:|:|   .|.|:..:..|||||::.|::..:.:|.....||...:|
  Rat   958 RAYCGKM-NFDHKNETLSISVQPGEGNKASFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLD 1021

  Fly  1235 EIDAALDFKNVSIVGHYI---KERTKNAQFIIVSLRVNMFEL-ANFLVGIYKVSDCTDSITMLNY 1295
            |.|..:|..|..|....|   .:..:..|||:::.: :|..| ::.|:.|.::||.....|.|.:
  Rat  1022 EFDVYMDMVNRRIAMDMILKMADSQRFRQFILLTPQ-SMSSLPSSKLIRILRMSDPERGQTTLPF 1085

  Fly  1296 PP 1297
            .|
  Rat  1086 RP 1087

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gluNP_723996.1 ABC_SMC4_euk 87..>246 CDD:213241 40/166 (24%)
Smc 89..1281 CDD:224117 252/1292 (20%)
SMC_hinge 618..733 CDD:214944 19/121 (16%)
ATP-synt_B <825..904 CDD:304375 13/79 (16%)
ABC_SMC4_euk <1196..1290 CDD:213241 27/97 (28%)
Smc6NP_001101484.1 Smc 54..1075 CDD:224117 253/1296 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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