DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment glu and smc-6

DIOPT Version :9

Sequence 1:NP_723996.1 Gene:glu / 35001 FlyBaseID:FBgn0015391 Length:1409 Species:Drosophila melanogaster
Sequence 2:NP_496476.2 Gene:smc-6 / 174776 WormBaseID:WBGene00010056 Length:1149 Species:Caenorhabditis elegans


Alignment Length:1323 Identity:261/1323 - (19%)
Similarity:485/1323 - (36%) Gaps:379/1323 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 TGPRLIIS----KIVNRNFKSYAG-EVELGPFHQSFTAIIGPNGSGKSNVIDSMMFVFGCRANRI 142
            ||.|:.:|    .:...||..:|. :::......:...|.||||||||.:..::....|.|.:  
 Worm    37 TGERIAVSGRVASVKLTNFMCHANLQIDFKTAQNNCFYIGGPNGSGKSALFAAINLGLGGRGS-- 99

  Fly   143 RCKRVSTLIHSSSSYPNLRSCSVAVHFKQIVDKGDGTCEDV-------------P--DSSIVIER 192
                           .|.|..:|..:.|      |||.:..             |  |..|.|||
 Worm   100 ---------------DNDRGNTVKSYIK------DGTTQSKITITLTNAGLNAHPDFDDLISIER 143

  Fly   193 TAMSDNSSYYQ---------------INDKRAQLKDVAKLLKKHHVDLEHNRFLILQGEVES-IA 241
            |....:|:|..               ::.|:|   ||.:::.:..:.|.:..|.:.|....| :|
 Worm   144 TINQASSTYIMKSVKVTSSDNHVERIVSRKKA---DVDRIVSRFSIHLSNPAFWMSQDRSRSFLA 205

  Fly   242 MMKPKG-------QTENETGMLEYLE-----------------DIVGTQRYIRPLQQINQRVDQL 282
            ..||..       .|..|...|.|:.                 :|:..|:.::.:|:......:|
 Worm   206 NFKPANVYKLYLESTNLENIRLSYIRFADALDECFALIQLKAGEILNEQKKLKRMQEQRDLQAKL 270

  Fly   283 TDDRTEKHNRC-KLAEREMKDLEQPFNEAVDYLKKENELVRTKSFHIQKIISIKKSKLEQYTQEH 346
            ..||....:.| ||...:::|    :|:.::...|:.|..:|.....:|..:..::...:..::.
 Worm   271 DQDRALVASFCWKLLFCKVRD----YNDQIELTLKKQEAQKTLQDETKKEYAKNRAARTEVEKKI 331

  Fly   347 EACAEELKTHDEGTAALKQSRAEKETIIRKEIEEYEALVKKREQIKKRLVTVESAYTEIQSTMEN 411
            :...:|::..|   |.:.::|.:.:...||.:|..|.:.:..:.|:|:  |.|..|.|  .|:.|
 Worm   332 QEFRDEVEVQD---AEIAEAREDLDAKKRKVLEFEEKIRECEQSIRKK--TSEKKYME--RTIVN 389

  Fly   412 TNKQRKKDKAQIEKNEKELEDLHKLPEKNQREIEDCNKKLESLEVSKVTLNEELEKQQAELTKTT 476
            .     |::.:|...::..:||.|...|.:.:.:|.:::.|::|                     
 Worm   390 A-----KNEVRILLEKQGNQDLTKRLTKVENDYKDISQQRENME--------------------- 428

  Fly   477 APLTEKRLKLSDELVGLKEKVNTAKGEVQVFESQLKILKQAETTESRKYETLKSSYEQSQKSLEE 541
                     |..|...|:||::|             ::...:..|..|| |::....|.::.:| 
 Worm   429 ---------LGGESAKLREKLDT-------------VITDYKRKEEEKY-TIQRDINQLRRKIE- 469

  Fly   542 KVTRVDELKESIPRMKTEIASKSAEVDKMVKEERNLSMQCNKLRTEINERSSVMQAQRSNNKVLD 606
                     :.:..|:...|:|...::|.......:.|       |||...|..|.         
 Worm   470 ---------QDMETMRRSRATKKDAINKFGSHMAEILM-------EINRSKSRFQT--------- 509

  Fly   607 FLMRMKMEGKIP-GILGRLGDLGGIDAKYDIAISTACGRL-DNIVTDNYETASAAIGALKEYNV- 668
                      :| |.||:...|  ||.|:...:....|.| :|.:..::..|.......:...: 
 Worm   510 ----------VPKGPLGKYITL--IDPKWAFTVEECIGNLANNFLCSSHLDAEILRNIFQSLRIP 562

  Fly   669 --GRATFITLDKIEHHRREANSRINTPENVP-----RLYDLVKVEDDRVRTAFYFALRNTLV--- 723
              .|.|.|.        .:.|.|..|..:.|     .:|.::|..|..|        .|.::   
 Worm   563 AQDRPTIIV--------AKCNGRAYTNLHEPSSDFKSIYRVLKFSDPDV--------HNVIIDKS 611

  Fly   724 -CDD---LEQGTRIAY-------GRERYRVVTLRGEMIEMTGT------MSGGGSRPIRGKMGTQ 771
             |:.   :|..|....       .:...:..||.|......|.      .||.|.. .||..|..
 Worm   612 NCEQFILIEDKTEAMELMGSNYPPQNAVKAYTLDGSQAYANGPNSQYRFYSGRGGH-ARGTFGND 675

  Fly   772 VRTKTAESADSSQISQKALEDMQIQAEELQARVNYCQEQQGSLEREIQTLKNGLQRDEAEYKRLA 836
             :....|.|.:..|.....|.|:::.::|:.:           :.|::.:.|  :||:.:     
 Worm   676 -QGDVDEGALARLIEDTKSEAMRLETQDLRKQ-----------DHELKVIYN--ERDQTK----- 721

  Fly   837 VSITSLEQQMASNLKQCEAQRQRMLKKTTDERAVKEREEQIEAAKQELEQAQFAEQAVSSQIEEI 901
            .:|...:::: |||:..|.|::|..|..                     :|:.|:.|...|:|.:
 Worm   722 AAIDEFDRKL-SNLRSQELQKERQAKDL---------------------RAELAQTANEDQVENL 764

  Fly   902 QNQYDTLRNESVKPVEAKIKKVNSQIEKLAANVRSLNVGLATADRNITKITGNNNNLRENIKAAE 966
                    |||::.::.||..:..:::.:..||..:...:|..             ::|. |.||
 Worm   765 --------NESIEEMQKKIPLIEDEVKDILKNVADITADMAPV-------------IQER-KEAE 807

  Fly   967 EKLKSLNEDRNKAKEKKEELEKEIEESEASIEGAKSQSSDIKKEIDEITKEENKRNIERIEIDTK 1031
            ..|..:.::......|.::|:.|:.:.:.:.|..|.:...:|.:.......|.|...||.:    
 Worm   808 HTLAEIQKETRDFASKSQKLQNELSKYDDAGEILKIRLDKVKADEGVFFHTEAKLKSERDD---- 868

  Fly  1032 LQAAAGKMNKVKND------IPGWQAQLAPLKLNEIPGETEPQAPLKELNEEELEAETLEALQYK 1090
                  .|..|:||      .||   :..|..|:..|..||.|..::|: ::.::..|:..    
 Worm   869 ------AMEMVENDKKNHPMPPG---ETDPPDLSSFPSTTEAQRKIEEM-QKAVDRATVGC---- 919

  Fly  1091 QTMLEEDLKTKKPNLSCIKEFNE--KRLVYLDRVRVLEDI-----------------TSKRNEMR 1136
            .|.:         .|.|:|:|.:  |||.||  .|::||:                 ..|..|::
 Worm   920 DTTI---------TLECVKDFKDKLKRLKYL--CRMIEDVLIELKNLHAARVKAYPSLKKFTELK 973

  Fly  1137 --DKYEEVRKRRYKEFMDG---------FSIITRKLKEMYQMITLGGDAELELVDSMD--PFTEG 1188
              :|::|:...| ..|:.|         .::..:..||...|  .|...|:..|:.:|  .:.:.
 Worm   974 VCNKFQELLAVR-GHFIGGLEFDHEKETLNVNVQSSKEKDAM--AGRRPEVLEVEEVDEHSYDDD 1035

  Fly  1189 VNFTVRPPKKSWKY----------ISNLSGGEKTLSSLALVFALHYYKPSPLYFMDEIDAALDFK 1243
            .:.:..|.:|..|.          :..|||||::..:.|||.:|......|...|||.|..:|..
 Worm  1036 SDDSTGPRRKKSKKSGQKKKRVRDLKGLSGGERSFVTAALVMSLWEVMEQPFRMMDEFDVFMDMM 1100

  Fly  1244 NVSIVGHYIKE-RTK---NAQFI 1262
            |..:|...:.| .||   :.|||
 Worm  1101 NRKLVMDLLVELATKKFPHNQFI 1123

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gluNP_723996.1 ABC_SMC4_euk 87..>246 CDD:213241 41/194 (21%)
Smc 89..1281 CDD:224117 258/1317 (20%)
SMC_hinge 618..733 CDD:214944 27/131 (21%)
ATP-synt_B <825..904 CDD:304375 15/78 (19%)
ABC_SMC4_euk <1196..1290 CDD:213241 25/81 (31%)
smc-6NP_496476.2 SMC_N 75..1128 CDD:330553 254/1285 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1196
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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