DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta4 and psma3

DIOPT Version :9

Sequence 1:NP_001260511.1 Gene:Prosbeta4 / 34999 FlyBaseID:FBgn0032596 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_001025358.1 Gene:psma3 / 564370 ZFINID:ZDB-GENE-050913-120 Length:255 Species:Danio rerio


Alignment Length:208 Identity:44/208 - (21%)
Similarity:81/208 - (38%) Gaps:56/208 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TLLGIKGPDFVMLAADTTHARSIIVMK---EDQNK-IHKVSDSLLISTVGESGDTEQFTEFISKN 63
            |.:||:..|.|:...:     .:::.|   |..|| |..:...:.::..|...|....:|...:.
Zfish    36 TAIGIRCKDGVVFGVE-----KLVLSKLYEEGSNKRIFNIDRHVGMAVAGLLADARSLSEVAREE 95

  Fly    64 IALYKMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQVF-----MFVAG-YDPNAGPELTFIDYLA 122
            .:.::...|:|:..:..|    ..:|.|:.:.|.|...     .|:.| ||.:.||:|..:|   
Zfish    96 ASSFRSNYGHDIPLKHLA----DRVAMYVHAYTLYSAVRPFGCSFILGSYDEDDGPQLYMVD--- 153

  Fly   123 NALPVNYAGHGYGAIFASSIYDRYWHPNITQAEAYDVFKKCIAEIQKRLVVNLKNFT-------- 179
               |   :|..||          ||...|.:|:     :....||:|   :.:|:.|        
Zfish   154 ---P---SGIAYG----------YWGCAIGKAK-----QAAKTEIEK---LQMKDMTCRELVKEV 194

  Fly   180 --VAVVDKDGVRD 190
              :..:..|.|:|
Zfish   195 AKIIYIVHDEVKD 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4NP_001260511.1 PRE1 1..194 CDD:223711 44/208 (21%)
proteasome_beta_type_2 1..192 CDD:239727 44/208 (21%)
psma3NP_001025358.1 proteasome_alpha_type_3 5..217 CDD:239720 44/208 (21%)
PRE1 6..241 CDD:223711 44/208 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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