DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta4 and psma8

DIOPT Version :9

Sequence 1:NP_001260511.1 Gene:Prosbeta4 / 34999 FlyBaseID:FBgn0032596 Length:201 Species:Drosophila melanogaster
Sequence 2:NP_998331.1 Gene:psma8 / 406445 ZFINID:ZDB-GENE-040426-2194 Length:251 Species:Danio rerio


Alignment Length:216 Identity:44/216 - (20%)
Similarity:84/216 - (38%) Gaps:64/216 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TLLGIKGPDFVMLAADTTHARSIIVMKEDQ--NKIHKVSDSLLISTVGESGD------------- 52
            |.:||:|.|.|:|..:   .:|:..::|::  .||..:.:.:.::..|.:.|             
Zfish    33 TAVGIRGKDIVVLGVE---KKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQ 94

  Fly    53 TEQFT-------EFISKNIALYKMRNGYDLSPRESAHFTRKNLAEYLRSRTPYQVFMFVAGYDPN 110
            :.:.|       |:|::.||..|.|            :|:.|      .|.|:.:...:.|:|.:
Zfish    95 SHRLTVEDPVTVEYITRYIATLKQR------------YTQSN------GRRPFGISALIVGFDYD 141

  Fly   111 AGPEL-------TFIDYLANALPVNYAGHGYGAIFASSIYDRYWHPNITQ---AEAYDVFKKCIA 165
            ..|.|       |:..:.|||:       |..|.......::    |.|.   |...|..|..|.
Zfish   142 GTPRLYQTDPSGTYHAWKANAI-------GRSAKTVREFLEK----NYTDEAIASDNDAIKLAIK 195

  Fly   166 EIQKRLVVNLKNFTVAVVDKD 186
            .:.:.:....||..:||:.::
Zfish   196 ALLEVVQSGGKNIELAVIRRN 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta4NP_001260511.1 PRE1 1..194 CDD:223711 44/216 (20%)
proteasome_beta_type_2 1..192 CDD:239727 44/216 (20%)
psma8NP_998331.1 proteasome_alpha_type_7 5..213 CDD:239724 43/211 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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